The Open Access Publications collection contains peer-reviewed articles authored by Washington University School of Medicine faculty that have been published in open access journals or authorized by the publishers for open access availability. Open access works are generally defined as being publicly available online and free of most licensing and copyright restrictions. The Bernard Becker Medical Library maintains this collection in support of Washington University’s commitment to the principles of open access publishing and making the scholarly work and research results of our faculty as widely and easily available as possible.

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Submissions from 2004

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Evidence for neural effects of repetition that directly correlate with behavioral priming, Luigi Maccotta and Randy L. Buckner

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A missense mutation in the γD crystallin gene (CRYGD) associated with autosomal dominant "coral-like" cataract linked to chromosome 2q, Donna S. Mackay, Usha P. Andley, and Alan Shiels

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Fosmid-based physical mapping of the Histoplasma capsulatum genome, Vincent Magrini, Wesley C. Warren, John Wallis, William E. Goldman, Jian Xu, Elaine R. Mardis, and John D. McPherson

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Vav GEFs are required for beta2 integrin-dependent functions of neutrophils, M. Angelica Martinez Gakidis, Xavier Cullere, Timothy Olson, Julie L. Wilsbacher, Bin Zhang, Sheri L. Moores, Klaus Ley, Wojciech Swat, Tanya Mayadas, and Joan S. Brugge

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Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures, Karen McGregor, Brian G. Spratt, Awdhesh Kalia, Alicia Bennett, Nicole Bilek, Bernard Beall, and Debra E. Bessen

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Novel 180- and 480-base-pair insertions in African and African-American strains of Helicobacter pylori, Shannon L. McNulty, Beth M. Mole, Daiva Dailidiene, Issy Segal, Reid Ally, Rajesh Mistry, Ousman Secka, Richard A. Adegbola, Julian E. Thomas, Erik M. Lenarcic, Richard M. Peek Jr, Douglas E. Berg, and Mark H. Forsyth

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Effects of an antibiotic cycling program on antibiotic prescribing practices in an intensive care unit, Liana R. Merz, David K. Warren, Marin H. Kollef, and Victoria J. Fraser

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An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression, David N. Messina, Jarret Glasscock, Warren Gish, and Michael Lovett

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Structural basis for the restoration of TCR recognition of an MHC allelic variant by peptide secondary anchor substitution, Michael J. Miley, Ilhem Messaoudi, Beatrix M. Metzner, Yudong Wu, Janko Nikolich-Žugich, and Daved H. Fremont

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Comparative Genomics of Gene Expression in the Parasitic and Free-Living Nematodes Strongyloides stercoralis and Caenorhabditis elegans, Makedonka Mitreva, James P. McCarter, John Martin, Mike Dante, Todd Wylie, Brandi Chiapelli, Deana Pape, Sandra W. Clifton, Thomas B. Nutman, and Robert H. Waterston

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Dinitroanilines bind α-tubulin to disrupt microtubules, Naomi S. Morrissette, Arpita Mitra, David Sept, and L. David Sibley

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Correlation of cerebrospinal fluid (CSF) cell counts and elevated CSF protein levels with enterovirus reverse transcription-PCR results in pediatric and adult patients, William S. Mulford, Richard S. Buller, Max Q. Arens, and Gregory A. Storch

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Antimicrobial susceptibility of Helicobacter pylori strains isolated in Bangladesh, Shamsun Nahar, Asish K. Mukhopadhyay, Rasel Khan, Mian Mashhud Ahmad, Simanti Datta, Santanu Chattopadhyay, Swapan Chandra Dhar, Shafiqul Alam Sarker, Lars Engstrand, Douglas E. Berg, Balakrish Nair, and Motiur Rahman

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Fog-2 and the evolution of self-fertile hermaphroditism in caenorhabditis, Sudhir Nayak, Johnathan Goree, and Tim Schedl

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Electrohydraulic high-energy shock-wave treatment for chronic plantar fasciitis, John A. Ogden, Richard G. Alvarez, Richard L. Levitt, Jeffrey E. Johnson, and Marie E. Marlow

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Role of the hydrophobic domain in targeting caveolin-1 to lipid droplets, Anne G. Ostermeyer, Lynne T. Ramcharan, Youchun Zeng, Douglas M. Lublin, and Deborah A. Brown

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Prevention and management of iatrogenic flatback deformity, Benjamin K. Potter and Lawrence G. Lenke

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Propagation of diffuse light in a turbid medium with multiple spherical inhomogeneities, Vitaliy N. Pustovit and Vadim A. Markel

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A cost-benefit analysis of gown use in controlling vancomycin-resistant Enterococcus transmission: Is it worth the price?, Laura A. Puzniak, Kathleen N. Gillespie, Terry Leet, Marin Kollef, and Linda M. Mundy

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Has the epidemiology of nosocomial candidemia changed?, Laura Puzniak, Steven Teutsch, William Powderly, and Louis Polish

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Drosophila C-terminal Src kinase negatively regulates organ growth and cell proliferation through inhibition of the Src, Jun N-terminal kinase, and STAT pathways, Renee D. Read, Erika A. Bach, and Ross L. Cagan

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Needle-based ablation of renal parenchyma using microwave, cryoablation, impedance- and temperature-based monopolar and bipolar radiofrequency, and liquid and gel chemoablation: Laboratory studies and review of the literature, Jamil Rehman, Jaime Landman, David Lee, Ramakrishna Venkatesh, David G. Bostwick, Chandru Sundaram, and Ralph V. Clayman

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Laparoscopic radical prostatectomy: Washington University initial experience and prospective evaluation of quality of life, Jamil Rehman, Maged M. Ragab, Ramakrishna Venkatesh, Jaime Landman, David Lee, Cathy Chen, Yan Yan, and Chandru P. Sundaram

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Smooth-muscle regeneration after electrosurgical endopyelotomy in a porcine model as confirmed by electron microscopy, Jamil Rehman, Maged M. Ragab, Ramakrishna Venkatesh, Chandru P. Sundaram, S. Ali Khan, Troy Sukkarieh, David Samadi, Bilal Chughtai, Francis White, David Bostwick, and Wayne Waltzer

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The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition, Chuan-Peng Ren, Roy R. Chaudhuri, Amanda Fivian, Christopher M. Bailey, Martin Antonio, Wayne M. Barnes, and Mark J. Pallen

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Conformational defects slow Golgi exit, block oligomerization, and reduce raft affinity of caveolin-1 mutant proteins, Xiaoyan Ren, Anne G. Ostermeyer, Lynne T. Ramcharan, Youchun Zeng, Douglas M. Lublin, and Deborah A. Brown

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In vitro and in vivo evaluation of a 64Cu-labeled polyethylene glycol-bombesin conjugate, Buck E. Rogers, Debbie Della Manna, and Ahmad Safavy

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Prolongation of life in anephric rats following de novo renal organogenesis, Sharon A. Rogers and Marc R. Hammerman

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Pseudarthrosis of a thirty-nine-year-old dens fracture causing myelopathy, Jonas R. Rudzki, Lawrence G. Lenke, and K. Daniel Riew

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Follow-up results of a phase II study of ibritumomab tiuxetan radioimmunotherapy in patients with relapsed or refractory low-grade, follicular, or transformed B-cell non-Hodgkin's lymphoma and mild thrombocytopenia, Russell Schilder, Arturo Molina, Nancy Bartlett, Thomas Witzig, Leo Gordon, James Murray, Stewart Spies, Hua Wang, Gregory Wiseman, and Christine White

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Clinical and laboratory features of Mycobacterium porcinum, Mark F. Schinsky and et al

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A randomized clinical trial comparing single- and multi-dose combination therapy with diethylcarbamazine and albendazole for treatment of bancroftian filariasis, Maged El Setouhy, Reda M.R. Ramzy, Ehab S. Ahmed, Amr M. Kandil, Omar Hussain, Hoda A. Farid, Hanan Helmy, and Gary J. Weil

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Legionella pneumophila dotU and icmF are required for stability of the Dot/Icm complex, Jessica A. Sexton, Jennifer L. Miller, Aki Yoneda, Thomas E. Kehl-Fie, and Joseph P. Vogel

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The legionella pneumophila PilT homologue DotB exhibits ATPase activity that is critical for intracellular growth, Jessica A. Sexton, Jerome S. Pinkner, Robyn Roth, John E. Heuser, Scott J. Hultgren, and Joseph P. Vogel

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Regulation of hypercompetence in Legionella pneumophila, Jessica A. Sexton and Joseph P. Vogel

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Massive thymic deletion results in systemic autoimmunity through elimination of CD4+ CD25+ T regulatory cells, Fei F. Shih, Laura Mandik-Nayak, Brian T. Wipke, and Paul M. Allen

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Ulnar-sided wrist pain: Diagnosis and treatment, Alexander Y. Shin, Mark A. Deitch, Kavi Sachar, and Martin I. Boyer

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NKG2D recognition and perforin effector function mediate effective cytokine immunotherapy of cancer, Mark J. Smyth, Jeremy Swann, Janice M. Kelly, Erika Cretney, Wayne M. Yokoyama, Andreas Diefenbach, Thomas J. Sayers, and Yoshihiro Hayakawa

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Treatment of terminal peritoneal carcinomatosis by a transducible p53-activating peptide, Eric L. Snyder, Bryan R. Meade, Cheryl C. Saenz, and Steven F. Dowdy

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Identification of a compensatory mutant (lpg2-REV) of Leishmania major able to survive as amastigotes within macrophages without LPG2-dependent glycoconjugates and its significance to virulence and immunization strategies, Gerald F. Spath, Lon-Fye Lye, Hiroaki Segawa, Salvatore J. Turco, and Stephen M. Beverley

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pVHL modification by NEDD8 is required for fibronectin matrix assembly and suppression of tumor development, Natalie H. Stickle, Jacky Chung, Jeffery M. Klco, Richard P. Hill, William G. Kaelin Jr., and Michael Ohh

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Laparoscopic sacrocolpopexy for the correction of vaginal vault prolapse, Chandru P. Sundaram, Ramakrishna Venkatesh, Jaime Landman, and Carl G. Klutke

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Inhibition of aldose reductase by tannoid principles of Emblica officinalis: Implications for the prevention of sugar cataract, P. Suryanarayana, P. Anil Kumar, Megha Saraswat, J. Mark Petrash, and G. Bhanuprakash Reddy

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Motility of urease-deficient derivatives of Helicobacter pylori, Shumin Tan and Douglas E. Berg

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Evaluation of the virological and metabolic effects of switching protease inhibitor combination antiretroviral therapy to nevirapine-based therapy for the treatment of HIV infection, Pablo Tebas, Kevin Yarasheski, Keith Henry, Sherri Claxton, E. Kane, B. Bordenave Regions Hospital, Michael Klebert, and William G. Powderly

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RANKing c-Jun in osteoclast development, Steven L. Teitelbaum

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Gene prediction and verification in a compact genome with numerous small introns, Aaron E. Tenney, Randall H. Brown, Charles Vaske, Jennifer K. Lodge, Tamara L. Doering, and Michael R. Brent

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Substitution of HIV type 1 Nef with HTLV-1 p12, Tomonori Tsukahara and Lee Ratner

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Involvement of salmonella pathogenicity island 2 in the up-regulation of interleukin-10 expression in macrophages: role of protein kinase a signal pathway, Kei-ichi Uchiya, Eduardo A. Groisman, and Toshiaki Nikai

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Regulation of the Ysa type III secretion system of Yersinia enterocolitica by YsaE/SycB and YsrS/YsrR, Kimberly A. Walker and Virginia L. Miller

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Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome, John Wallis, Tina Graves, Dan Layman, Derek Albracht, Jonathon Davito, Tony Gaige, Kelly Mead, Jason Walker, Mandeep Sekhon, LaDeana Hillier, Wes Warren, Elaine Mardis, John D. McPherson, Richard Wilson, and et al

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Expression profiling of murine acute promyelocytic leukemia cells reveals multiple model-dependent progression signatures, Matthew J. Walter, John S. Park, Steven K. M. Lau, Xia Li, Andrew A. Lane, Rakesh Nagarajan, William D. Shannon, and Timothy J. Ley

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Role of natural killer cells in innate protection against lethal Ebola virus infection, Kelly L. Warfield, Jeremy G. Perkins, Dana L. Swenson, Emily M. Deal, Catharine M. Bosio, M. Javad Aman, Wayne M. Yokoyama, Howard A. Young, and Sina Bavari

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Detection of methicillin-resistant Staphylococcus aureus directly from nasal swab specimens by a real-time PCR assay, David K. Warren, Robert S. Liao, Lina R. Merz, Michael Eveland, and W. Michael Dunne Jr.

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Occurrence of co-colonization or co-infection with vancomycin-resistant enterococci and methicillin-resistant Staphylococcus aureus in a medical intensive care unit, David K. Warren, Anand Nitin, and Cheri Hill

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Postexposure prophylaxis against varicella-zoster virus infection among recipients of hematopoietic stem cell transplant: Unresolved issues, David M. Weinstock, Michael Boeckh, Farid Boulad, Janet A. Eagan, Victoria J. Fraser, David K. Henderson, Trish M. Perl, Deborah Yokoe, and Kent A. Sepkowitz

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Replication of norovirus in cell culture reveals a tropism for dendritic cells and macrophages, Christiane E. Wobus, Stephanie M. Karst, Larissa B. Thackray, Kyeong-OK Chang, Stanislav V. Sosnovtsev, Gael Belliot, Anne Krug, Jason M. Mackenzie, Kim Y. Green, and Herbert W. Virgin IV

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Discs large (Dlg1) complexes in lymphocyte activation, Ramnik Xavier, Shahrooz Rabizadeh, Kazuhiro Ishiguro, Niko Andre, J. Bernabe Ortiz, Heather Wachtel, David G. Morris, Marco Lopez-Ilasaca, Albert C. Shaw, Wojciech Swat, and Brian Seed

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Latent class typology of nicotine withdrawal: genetic contributions and association with failed smoking cessation and psychiatric disorders, Hong Xian, Jeffrey F. Scherrer, Pamela A F Madden, Michael J. Lyons, Ming Tsuang, William R. True, and Seth A. Eisen

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Unveiling molecular scaffolds of the type IV secretion system, Hye-Jeong Yeo and Gabriel Waksman

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Fine needle aspiration of the thyroid: A cytohistologic correlation and study of discrepant cases, Lourdes R. Ylagan, Tunde Farkas, and Louis P. Dehner

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Yeast actin patches are networks of branched actin filaments, Michael E. Young, John A. Cooper, and Paul C. Bridgman

Submissions from 2003

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Genetic Analysis Workshop 13: Analysis of Longitudinal Family Data for Complex Diseases and Related Risk Factors, Laura Almasy, Christopher I. Amos, Joan E. Bailey-Wilson, Rita M. Cantor, Cashell E. Jaquish, Maria Martinez, Rosalind J. Neuman, Jane M. Olson, Lyle J. Palmer, Stephen S. Rich, M Anne Spence, and Jean W. MacCluer

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Risk factors for Stenotrophomonas maltophilia bacteremia in oncology patients: A case-control study, Anucha Apisarnthanarak, Jennie L. Mayfield, Teresa Garison, Patricia M. Mclendon, John F. DiPersio, Victoria J. Fraser, and Louis B. Polish

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Detection of Ehrlichia spp. in the Blood of wild white-tailed deer in Missouri by PCR assay and serologic analysis, Max Q. Arens, Allison M. Liddell, Gerald Buening, Monique Gaudreault-Keener, John W. Sumner, James A. Comer, Richard S. Buller, and Gregory A. Storch

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Differences in percutaneous injury patterns in a multi-hospital system, Hilary M. Babcock and Victoria Fraser

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Ventilator-associated pneumonia in a multi-hospital system: Differences in microbiology by location, Hilary M. Babcock, Jeanne E. Zack, Teresa Garrison, Ellen Trovillion, Marin H. Kollef, and Victoria J. Fraser

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Helicobacter pylori infection induces interleukin-8 receptor expression in the human gastric epithelium, Fredrik Backhed, Elisabeth Torstensson, Delphine Seguin, Agneta Richter-Dahlfors, and Bachra Rokbi

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Chaperone-subunit-usher interactions required for donor strand exchange during bacterial pilus assembly, Michelle M. Barnhart, Frederic G. Sauer, Jerome S. Pinkner, and Scott J. Hultgren

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Targeted inactivation of the IL-4 receptor α chain I4R motif tromotes allergic airway inflammation, Frank Blaeser, Paul J. Bryce, Nga Ho, Vidya Raman, Fatma Dedeoglu, Debra D. Donaldson, Raif S. Geha, Hans C. Oettgen, and Talal A. Chatila

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Pedicle subtraction osteotomy for the treatment of fixed sagittal imbalance, Keith H. Bridwell, Stephen J. Lewis, Lawrence G. Lenke, Christy Baldus, and Kathy Blanke

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Incorporation of gene-specific variability improves expression analysis using high-density DNA microarrays, Vikram Budhraja, Edward Spitznagel, W Timothy Schaiff, and Yoel Sadovsky

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Presence of active aliphatic amidases in Helicobacter species able to colonize the stomach, Stephanie Bury-Mone, Stephane Skouloubris, Catherine Dauga, Jean-Michel Thiberge, Daiva Dailidiene, Douglas E. Berg, Agnes Labigne, and Hilde De Reuse

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Cortactin is a component of clathrin-coated pits and participates in receptor-mediated endocytosis, Hong Cao, James D. Orth, Jing Chen, Shaun G. Weller, John E. Heuser, and Mark A. McNiven

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Impaired differentiation of osteoclasts in TREM-2–deficient individuals, Marina Cella, Cecilia Buonsanti, Carey Strader, Takayuki Kondo, Andrea Salmaggi, and Marco Colonna

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Alternating metabolic pathways in NGF-deprived sympathetic neurons affect caspase-independent death, Louis K. Chang, Robert E. Schmidt, and Eugene M. Johnson Jr.

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Osteopontin deficiency produces osteoclast dysfunction due to reduced CD44 surface expression, M. A. Chellaiah, N. Kizer, R. Biswas, U. Alvarez, J. Strauss-Schoenberger, L. Rifas, S. R. Rittling, D. T. Denhardt, and K. A. Hruska

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Chk1 kinase negatively regulates mitotic function of Cdc25A phosphatase through 14-3-3 binding, Mei-Shya Chen, Christine E. Ryan, and Helen Piwnica-Worms

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Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation, Melody S. Clark, Yvonne J.K. Edwards, Dan Peterson, Sandra W. Clifton, Amanda J. Thompson, Masahide Sasaki, Yutaka Suzuki, Kiyoshi Kikuchi, Shugo Watabe, Koichi Kawakami, Sumio Sugano, Greg Elgar, and Stephen L. Johnson

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Prevalence of the use of central venous access devices within and outside of the intensive care unit: Results of a survey among hospitals in the prevention epicenter program of the Centers for Disease Control and Prevention, Michael Climo, Dan Diekema, David K. Warren, Loreen A. Herwaldt, Trish M. Perl, Lance Peterson, Theresa Plaskett, Connie Price, Kent Sepkowitz, Steve Solomon, Jerry Tokars, Victoria J. Fraser, and Edward Wong

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Use of a random coefficient regression (RCR) model to estimate growth parameters, Jonathan Corbett, Aldi Kraja, Ingrid B. Borecki, and Michael A. Province

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Virulence genes and neutral DNA markers of Helicobacter pylori isolates from different ethnic communities of West Bengal, India, Simanti Datta, Santanu Chattopadhyay, G. Balakrish Nair, Asish K. Mukhopadhyay, Jabaranjan Hembram, Douglas E. Berg, Dhira Rani Saha, Asis Khan, Amal Santra, S. K. Bhattacharya, and Abhijit Chowdhury

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Phosphorylation-dependent regulation of T-cell activation by PAG/Cbp, a lipid raft-associated transmembrane adaptor, Dominique Davidson, Marcin Bakinowski, Matthew L. Thomas, Vaclav Horejsi, and Andre Veillette

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Dual function of Slit2 in repulsion and enhanced migration of trunk, but not vagal, neural crest cells, Maria Elena De Bellard, Yi Rao, and Marianne Bronner-Fraser

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A critical role for induced IgM in the protection against West Nile virus infection, Michael S. Diamond, Elizabeth M. Sitati, Lindzy D. Friend, Stephen Higgs, Bimmi Shrestha, and Michael Engle

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Sensitivity to changes in disability after stroke: A comparison of four scales useful in clinical trials, Alexander W. Dromerick, Dorothy F. Edwards, and Michael N. Diringer

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The rovA mutant of Yersinia enterocolitica displays differential degrees of virulence depending on the route of infection, Peter H. Dube, Scott A. Handley, Paula A. Revell, and Virginia L. Miller

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Forssman synthetase expression results in diminished Shiga toxin susceptibility: A role for glycolipids in determining host-microbe interactions, Sean P. Elliott, Min Yu, Huaijin Xu, and David B. Haslam

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YmoA negatively regulates expression of invasin from Yersinia enterocolitica, Damon W. Ellison, Briana Young, Kristin Nelson, and Virginia L. Miller

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Gating Mechanism of KATP Channels: Function Fits Form, Decha Enkvetchakul and Colin G. NIchols

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Dynamic changes in the osteoclast cytoskeleton in response to growth factors and cell attachment are controlled by β3 integrin, Roberta Faccio, Deborah V. Novack, Alberta Zallone, F. Patrick Ross, and Steven L. Teitelbaum

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Dynamic changes in the osteoclast cytoskeleton in response to growth factors and cell attachment are controlled by beta-3 integrin, Roberta Faccio, Deborah V. Novack, Alberta Zallone, F. Patrick Ross, and Steven L. Teitelbaum

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Regulation of fyn through translocation of activated Lck into lipid rafts, Dominik Filipp, Jenny Zhang, Bernadine L. Leung, Andrey Shaw, Steven D. Levin, André Veillette, and Michael Julius

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Chromosomal expression of the Haemophilus influenzae hap autotransporter allows fine-tuned regulation of adhesive potential via inhibition of intermolecular autoproteolysis, Doran L. Fink and Joseph W. St. Geme III

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Software for automated analysis of DNA fingerprinting gels, Daniel R. Fuhrmann, Martin I. Krzywinski, Readman Chiu, Parvaneh Saeedi, Jacqueline E. Schein, Ian E. Bosdet, Asif Chinwalla, LaDeana W. Hillier, Robert H. Waterston, John D. McPherson, Steven J.M. Jones, and Marco A. Marra

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Vav1/2/3-null mice define an essential role for vav family proteins in lymphocyte development and activation but a differential requirement in MAPK signaling in T and B cells, Keiko Fujikawa, Ana V. Miletic, Frederick W. Alt, Roberta Faccio, Tracie Brown, Jeremy Hoog, Jessica Fredericks, Shinzo Nishi, Shirly Mildiner, Sheri L. Moores, Joan Brugge, Fred S. Rosen, and Wojciech Swat

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Role of cytokines and major histocompatibility complex restriction in mouse resistance to infection with a natural Recombinant strain (Type I-III) of Toxoplasma gondii, Blima Fux, Cibele V. Rodrigues, Ricardo W. Portela, Neide M. Silva, Chunlei Su, David Sibley, Ricardo W. A. Vitor, and Ricardo T. Gazzinelli

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Transposon mutagenesis of Mycobacterium marinum identifies a locus linking pigmentation and intracellular survival, Lian-Yong Gao, Richard Groger, Jeffery S. Cox, Stephen M. Beverley, Elise H. Lawson, and Eric J. Brown

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Mammalian GGAs act together to sort mannose 6-phosphate receptors, Pradipta Ghosh, Janice Griffith, Hans J. Geuze, and Stuart Kornfeld

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AP-1 binding to sorting signals and release from clathrin-coated vesicles is regulated by phosphorylation, Pradipta Ghosh and Stuart Kornfeld