The Open Access Publications collection contains peer-reviewed articles authored by Washington University School of Medicine faculty that have been published in open access journals or authorized by the publishers for open access availability. Open access works are generally defined as being publicly available online and free of most licensing and copyright restrictions. The Bernard Becker Medical Library maintains this collection in support of Washington University’s commitment to the principles of open access publishing and making the scholarly work and research results of our faculty as widely and easily available as possible.

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Submissions from 2016

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Managing breast cancer in younger women: Challenges and solutions, Foluso O. Ademuyiwa, Amy Cyr, Jennifer Ivanovich, and Maria A. Thomas

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Adaptation and evaluation of the neighborhood environment walkability scale in India (NEWS-India), Deepti Adlakha, J. Aaron Hipp, and Ross C. Brownson

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High-performance web services for querying gene and variant annotation, Benjamin J. Ainscough, Obi L. Griffith, and et al

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Anxious/depressed symptoms are related to microstructural maturation of white matter in typically developing youths, Matthew D. Albaugh, Simon Ducharme, Sherif Karama, Richard Watts, John D. Lewis, Catherine Orr, Tuong-Vi Nguyen, Robert C. McKinstry, Kelly N. Botteron, Alan C. Evans, James J. Hudziak, and The Brain Development Cooperative Group

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A sign on CT that predicts a hazardous ureteral anomaly, E. S. Allam, D. Y. Johnson, S. G. Grewal, and F. E. Johnson

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GenSeed-HMM: A tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data, João M.P. Alves, Andre L. de Oliveira, Tatiana O.M. Sandberg, Jaime L. Moreno-Gallego, Marcelo A.F. de Toledo, Elisabeth M.M. de Moura, Liliane S. Oliveira, Alan M. Durham, Dolores U. Mehnert, Paolo M. de A. Zanotto, Alejandro Reyes, and Arthur Gruber

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RNA-Seq of the Caribbean reef-building coral Orbicella faveolata (Scleractinia-Merulinidae) under bleaching and disease stress expands models of coral innate immunity, David A. Anderson, Marcus E. Walz, Ernesto Weil, Peter Tonellato, and Matthew C. Smith

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Predictors of full-time faculty appointment among MD-PhD program graduates: A national cohort study, Dorothy A. Andriole and Donna B. Jeffe

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Diffusion tensor imaging with direct cytopathological validation: Characterisation of decorin treatment in experimental juvenile communicating hydrocephalus, Anuriti Aojula, Hannah Botfield, James Patterson McAllister II, Ana Maria Gonzalez, Osama Abdullah, Ann Logan, and Alexandra Sinclair

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Evaluation of an immunochromatographic assay for rapid detection of penicillin-binding protein 2a in human and animal Staphylococcus intermedius group, Staphylococcus lugdunensis, and Staphylococcus schleiferi clinical isolate, A. R. Arnold, Carey-Ann Burnham, B. A. Ford, S. D. Lawhon, S. K. McAllister, D Lonsway, V. Albrecht, R. C. Jerris, J. K. Rasheed, B. Limbago, E. M. Burd, and L. F. Westblade

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Racial and ethnic heterogeneity in self-reported diabetes prevalence trends across Hispanic subgroups, National Health Interview Survey, 1997–2012, Cassandra Arroyo-Johnson, Krista D. Mincey, Nicole Ackermann, Laurel Milam, Melody S. Goodman, and Graham A. Colditz

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Vortex ring behavior provides the epigenetic blueprint for the human heart, Per M. Arvidsson, Sándor J. Kovács, Johannes Töger, Rasmus Borgquist, Einar Heiberg, Marcus Carlsson, and Håkan Arheden

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Maternal fructose drives placental uric acid production leading to adverse fetal outcomes, Zeenat A. Asghar, Alysha Thompson, Maggie Chi, Andrew Cusumano, Suzanne Scheaffer, Noor Al-Hammadi, Jessica L. Saben, and Kelle H. Moley

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Combinatorial strategies based on CRAd-IL24 and CRAd-ING4 virotherapy with anti-angiogenesis treatment for ovarian cancer, Ahmad Mohammad Ashshi, Adel Galal El-Shemi, Igor P. Dmitriev, Elena A. Kashentseva, and David T. Curiel

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Exploring the physiological correlates of chronic mild traumatic brain injury symptoms, Serguei V. Astafiev, Kristina L. Zinn, Gordon L. Shulman, and Maurizio Corbetta

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Implantable loop recorder monitoring for refining management of children with inherited arrhythmia syndromes, Jennifer N. Avari Silva, Burt I. Bromberg, Fredrick K. Emge, Tammy M. Bowman, and George F. Van Hare

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Rab3-GEF controls active zone development at the Drosophila neuromuscular junction, Haneui Bae, Shirui Chen, John P. Roche, Minrong Ai, Chunlai Wu, Aaron Diantonio, and Ethan R. Graf

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Sterilization of lung matrices by supercritical carbon dioxide, Jenna L. Balestrini, Angela Liu, Ashley L. Gard, Janet Huie, Kelly M S Blatt, Jonas Schwan, Liping Zhao, Tom J. Broekelmann, Robert P. Mecham, Elise C. Wilcox, and Laura E. Niklason

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PER1 rs3027172 genotype interacts with early life stress to predict problematic alcohol use, but not reward-related ventral striatum activity, David A.A. Baranger, Chloe Ifrah, Aric A. Prather, Caitlin E. Carey, Nadia S. Corral-Frias, Emily Drabant Conley, Ahmad R. Hariri, and Ryan Bogdan

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Compliance to the smoke-free law in Guatemala 5-years after implementation, Joaquin Barnoya, Jose C. Monzon, Paulina Briz, and Ana Navas-Acien

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Critical evaluation of the expression of gastrin-releasing peptide in dorsal root ganglia and spinal cord, Devin M. Barry, Hui Li, Xian-Yu Liu, Kai-Feng Shen, Xue-Ting Liu, Zhen-Yu Wu, Admire Munanairi, Xiao-Jun Chen, Jun Yin, Yan-Gang Sun, Yun-Qing Li, and Zhou-Feng Chen

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Cerebrovascular disease and chronic obstructive pulmonary disease increase risk of complications with robotic partial nephrectomy, Tyler M. Bauman, Aaron M. Potretzke, Joel M. Vetter, Sam B. Bhayani, and Robert Sherburne Figenshau

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Neonatal brain tissue classification with morphological adaptation and unified segmentation, Richard J. Beare, Jian Chen, Claire E. Kelly, Dimitrios Alexopoulos, Chistopher D. Smyser, Cynthia E. Rogers, Wai Y. Loh, Lillian G. Matthews, Jeanie L.Y. Cheong, Alicia J. Spittle, Peter J. Anderson, Lex W. Doyle, Terrie E. Inder, Marc L. Seal, and Deanne K. Thompson

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RAG-mediated DNA double-strand breaks activate a cell type-specific checkpoint to inhibit pre-B cell receptor signals, Jeffrey J. Bednarski, Ruchi Pandey, Emily Schulte, Lynn S. White, Bo-Ruei Chen, Gabriel J. Sandoval, Masako Kohyama, Malay Haldar, Andrew Nickless, Amanda Trott, Genhong Cheng, Kenneth M. Murphy, Craig H. Bassing, Jacqueline E. Payton, and Barry P. Sleckman

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Resequencing analysis of five Mendelian genes and the top genes from genome-wide association studies in Parkinson’s Disease, Bruno A. Benitez, Albert A. Davis, Sheng Chih Jin, Laura Ibanez, Sara Ortega-Cubero, Pau Pastor, Jiyoon Choi, Breanna Cooper, Joel S. Perlmutter, and Carlos Cruchaga

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Maternal collapse: Challenging the four-minute rule, M. D. Benson, A. Padovano, G. Bourjeiily, and Y. Zhou

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Complex pediatric wound care with a dedicated pediatric wound care service: A review of our 12-year experience, Kathryn Q. Bernabe

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Accuracy and precision of an accelerometer-based smartphone app designed to monitor and record angular movement over time, Adam J. Bittel, Ashraf Elazzazi, and Daniel C. Bittel

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Provisional tic disorder: What to tell parents when their child first starts ticcing, Kevin J. Black, Elizabeth Rose Black, Deanna J. Greene, and Bradley L. Schlaggar

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Normal brain response to propofol in advance of recovery from unresponsive wakefulness syndrome, Stefanie Blain-Moraes, Rober Boshra, Heung Kan Ma, Richard Mah, Kyle Ruiter, Michael Avidan, John F. Connolly, and George A. Mashour

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Lung transplantation in cystic fibrosis: trends and controversies, Joshua Blatter and Stuart Sweet

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Community attitudes toward mass drug administration for control and elimination of neglected tropical diseases after the 2014 outbreak of Ebola virus disease in Lofa County, Liberia, Joshua Bogus, Lincoln Gankpala, Kerstin Fischer, Alison Krentel, Gary J. Weil, Peter U. Fischer, Karsor Kollie, and Fatorma K. Bolay

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Semantics of the visual environment encoded in parahippocampal cortex, Michael F. Bonner, Amy Rose Price, Jonathan E. Peelle, and Murray Grossman

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Influence of EMS-physician presence on survival after out-of-hospital cardiopulmonary resuscitation: Systematic review and meta-analysis, Bernd W. Bottinger, Michael Bernhard, Jurgen Knapp, and Peter Nagele

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Abnormal X chromosome inactivation and sex-specific gene dysregulation after ablation of FBXL10, Mathieu Boulard, John R. Edwards, and Timothy H. Bestor

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Establishing the feasibility of the dosimetric compliance criteria of RTOG 1308: Phase III randomized trial comparing overall survival after photon versus proton radiochemotherapy for inoperable stage II-IIIB NSCLC, Jeffrey D. Bradley and et al

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Data publication with the structural biology data grid supports live analysis, Tom J. Brett, Niraj H. Tolia, and et al

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Distinct transcriptional programs control cross-priming in classical and monocyte-derived dendritic cells, Carlos G. Briseno, Malay Haldar, Nicole M. Kretzer, Xiaodi Wu, Derek J. Theisen, Wumesh KC, Vivek Durai, Gary E. Grajales-Reyes, Arifumi Iwata, Prachi Bagadia, Theresa L. Murphy, and Kenneth M. Murphy

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Nonalcoholic fatty liver disease: Pros and cons of histologic systems of evaluation, Elizabeth M. Brunt

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Accuracy of coverage survey recall following an integrated mass drug administration for lymphatic filariasis, schistosomiasis, and soil-transmitted helminthiasis, Philip J. Budge, Edmond Sognikin, Amanda Akosa, Els M. Mathieu, and Michael Deming

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Deregulated lipid sensing by intestinal CD36 in diet-induced hyperinsulinemic obese mouse model, Marjorie Buttet, Helene Poirier, Veronique Traynard, Kevin Gaire, Thi Thu Trang Tran, Sinju Sundaresan, Philippe Besnard, Nada A. Abumrad, and Isabelle Niot

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The effect of dopaminergic medication on beat-based auditory timing in Parkinson’s disease, Daniel J. Cameron, Kristen A. Pickett, Gammon M. Earhart, and Jessica A. Grahn

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Divergent viral presentation among human tumors and adjacent normal tissues, Song Cao, Michael C. Wendl, Matthew A. Wyczalkowski, Kristine Wylie, Kai Ye, Reyka Jayasinghe, Mingchao Xie, Song Wu, Beifang Niu, Robert Grubb III, Kimberly J. Johnson, Hiram Gay, Ken Chen, Janet S. Rader, John F. Dipersio, Feng Chen, and Li Ding

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Interleukin-17A contributes to the control of Streptococcus pyogenes colonization and inflammation of the female genital tract, Alison J. Carey, Jason B. Weinberg, Suzanne R. Dawid, Carola Venturini, Alfred K. Lam, Victor Nizet, Michael G. Caparon, Mark J. Walker, and Michael E. Watson

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Encouraging antibiotic development and endorsing conservation: Tandem approaches to our declining antibiotic reserves, Kevin A. Cassady, Jason G. Newland, and Lisa Saiman

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Impact of age and sex on outcomes and hospital cost of acute asthma in the United States, 2011-2012, Mario Castro and et al.

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Longitudinal evaluation of cognitive functioning in young children with type 1 diabetes over 18 months, M. Allison Cato, Nelly Mauras, Paul Mazaika, Craig Kollman, Peiyao Cheng, Tandy Aye, Jodie Ambrosino, Roy W. Beck, Katrina J. Ruedy, Allan L. Reiss, Michael Tansey, Neil H. White, and Tamara Hershey

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Striatal activity is associated with deficits of cognitive control and aberrant salience for patients with schizophrenia, Alan E. Ceaser and Deanna M. Barch

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The NADase-negative variant of the Streptococcus pyogenes toxin NAD+ glycohydrolase induces JNK1-mediated programmed cellular necrosis, Sukantha Chandrasekaran and Michael G. Caparon

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Evidence for differential glycosylation of trophoblast cell types, Qiushi Chen, Poh-Choo Pang, Marie E. Cohen, Mark S. Longtime, Danny J. Schust, Stuart M. Haslam, Sandra M. Blois, Anne Dell, and Gary F. Clark

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ABCG1 maintains high-grade glioma survival in vitro and in vivo, Yi-Hsien Chen, Patrick J. Cimino, Jingqin Luo, Sonika Dahiya, and David H. Gutmann

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Measurement of circulating filarial antigen levels in human blood with a point-of-care test strip and a portable spectrodensitometer, Cédric B. Chesnais, Johnny Vlaminck, Billy Kunyu-Shako, Sébastien D. Pion, Naomi-Pitchouna Awaca-Uvon, Gary J. Weil, Dieudonné Mumba, and Michel Boussinesq

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A diet mimicking fasting promotes regeneration and reduces autoimmunity and multiple sclerosis symptoms, In Young Choi, Laura Piccio, Patra Childress, Bryan Bollman, Arko Ghosh, Sebastian Brandhorst, Jorge Suarez, Andreas Michalsen, Anne H. Cross, Todd E. Morgan, Min Wei, Friedemann Paul, Markus Bock, and Valter D. Longo

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Genome-wide polygenic scores for age at onset of alcohol dependence and association with alcohol-related measures, Y-L Chou, P A F. Madden, L J. Bierut, A C. Heath, K K. Bucholz, and A Agrawal

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Hormonal responses to cholinergic input are different in humans with and without type 2 diabetes mellitus, Sara Chowdhury, Songyan Wang, Jundit Dunai, Rachel Kilpatrick, Lauren Z. Oestricker, Michael J. Wallendorf, Bruce W. Patterson, Dominic N. Reeds, and Burton M. Wice

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Rectal budesonide and mesalamine formulations in active ulcerative proctosigmoiditis: efficacy, tolerance, and treatment approach, George P. Christophi, Arvind Rengarajan, and Matthew A. Ciorba

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The effect of chloroquine on immune activation and interferon signatures associated with HIV-1, David Clifford and et al

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The myocardial and coronary histopathology and pathogenesis of hypoplastic left heart syndrome, Charles R. Cole and Pirooz Eghtesady

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Baseline results of the NeuroNEXT spinal muscular atrophy infant biomarker study, Anne M. Connolly and et al

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Breast reconstruction after mastectomy at a comprehensive cancer center, Shahnjayla K. Connors, Melody S. Goodman, Terence Myckatyn, Julie Margenthaler, and Sarah Gehlert

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Metabolic requirements of Escherichia coli in intracellular bacterial communities during urinary tract infection pathogenesis, Matt S. Conover, Maria Hadjifrangiskou, Joseph J. Palermo, Michael E. Hibbing, Karen W. Dodson, and Scott J. Hultgren

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The action of discoidin domain receptor 2 in basal tumor cells and stromal cancer-associated fibroblasts Is critical for breast cancer metastasis, Callie A.S. Corsa, Audrey Brenot, Whitney R. Grither, Samantha Van Hove Washington University School of Medicine in St. Louis, Andrew J. Loza, Kun Zhang, Suzanne M. Ponik, Yuming Liu, David G. DeNardo, Kevin W. Eliceiri, Patricia J. Keely, and Gregory D. Longmore

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Transcriptome analysis of chemically-induced sensory neuron ablation in zebrafish, Jane A. Cox, Bo Zhang, Holly M. Pope, and Mark M. Voight

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Trajectories of depressive symptoms after hip fracture, P. Cristancho, E. J. Lenze, M. S. Avidan, and K. S. Rawson

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Dynorphin controls the gain of an amygdalar anxiety circuit, NIcole A. Crowley, Daniel W. Bloodgood, J. Andrew Hardaway, Alexis M. Kendra, Jordan G. McCall, Ream Al-Hasani, Nora M. McCall, Waylin Yu, Zachary L. Schools, Michael J. Krashes, Bradford B. Lowell, Jennifer L. Whistler, Michael R. Bruchas, and Thomas L. Kash

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Influence of coding variability in APP-Aβ metabolism genes in sporadic Alzheimer’s disease, Carlos Cruchaga and et al.

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Complexities of X chromosome inactivation status in female human induced pluripotent stem cells—a brief review and scientific update for autism research, Mary G. Dandulakis, Kesavan Meganathan, Kristen L. Kroll, Azad Bonni, and John N. Constantino

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Changes in the relative abundance of two Saccharomyces species from oak forests to wine fermentations, Sofia Dashko, Ping Liu, Helena Volk, Lorena Butinar, Jure Piškur, and Justin C. Fay

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The two sides of sensory–cognitive interactions: Effects of age, hearing acuity, and working memory span on sentence comprehension, Renee DeCaro, Jonathan E. Peelle, Murray Grossman, and Arthur Wingfield

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Thymic stromal lymphopoietin blocks early stages of breast carcinogenesis, Shadmehr Demehri, Trevor J. Cunningham, Sindhu Manivasagam, Kenneth H. Ngo, Sara Moradi Tuchayi, Rasikia Reddy, Melissa A. Meyers, David G. DeNardo, and Wayne M. Yokoyama

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Nicotinamide mononucleotide supplementation reverses vascular dysfunction and oxidative stress with aging in mice, Natalie E. de Picciotto, Lindsey B. Gano, Lawrence C. Johnson, Christopher R. Martens, Amy L. Sindler, Kathryn F. Mills, Shin-ichiro Imai, and Douglas R. Seals

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Epidemiological and economic burden of Clostridium difficile in the United States: Estimates from a modeling approach, Kamal Desai, Swati B. Gupta, Erik R. Dubberke, Vimalanand S. Prabhu, Chantelle Browne, and T. Christopher Mast

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Progressive elbow pain, Alexis Descatha, Thomas Despreaux, Ryan P. Calfee, Bradley Evanoff, and Olivier Saint-Lary

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Sexual dimorphism in myocardial acylcarnitine and triglyceride metabolism, Sriram Devanathan, Timothy D. Whitehead, Nicole Fettig, Robert J. Gropler, Samuel Nemanich, and Kooresh I. Shoghi

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Academic cross-pollination: The role of disciplinary affiliation in research collaboration, Amar Dhand, Douglas A. Luke, Bobbi J. Carothers, and Bradley A. Evanoff

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Consumption of caffeinated products and cardiac ectopy, Shalini Dixit, Phyllis K. Stein, Thomas A. Dewland, Jonathan W. Dukes, Eric Vittinghoff, Susan R. Heckbert, and Gregory M. Marcus

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Investigation of linezolid resistance in staphylococci and enterococci, Christopher D. Doern, Jason Y. Park, Michael Gallegos, Debbie Alspaugh, and Carey-Ann D. Burnham

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Practical considerations for noise power spectra estimation for clinical CT scanners, Steven Dolly, Hsin-Chen Chen, Mark Anastasio, Sasa Mutic, and Hua Li

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Secondary consent to biospecimen use in a prostate cancer biorepository, Bettina F. Drake, Katherine Brown, Lucy D'Agostino McGowan, Jennifer Haslag-Minoff, and Kimberly Kaphingst

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Candidate gene resequencing to identify rare, pedigree-specific variants influencing healthy aging phenotypes in the long life family study, Todd E. Druley, Lihua Wang, Shiow J. Lin, Joseph H. Lee, Qunyuan Zhang, E. Warwick Daw, Haley J. Abel, Sara E. Chasnoff, Enrique I. Ramos, Benjamin T. Levinson, Bharat Thyagarajan, Anne B. Newman, Kaare Christensen, Richard Mayeux, and Michael A. Province

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Identification of Medicare recipients at highest risk for Clostridium difficile infection in the US by population attributable risk analysis, Erik R. Dubberke, Margaret A. Olsen, Dustin Stwalley, Ciaran P. Kelly, Dale N. Gerding, Yinong Young-Xu, and Cedric Mahe

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Quantifying transmission of clostridium difficile within and outside healthcare settings, David P. Durham, Margaret A. Olsen, Erik R. Dubberke, Alison P. Galvani, and Jeffrey P. Townsend

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The basal bodies of Chlamydomonas reinhardtii, Susan Dutcher and Eileen T. O'Toole

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The evolving role of clinical registries: Existing practices and opportunities for orthopaedic surgeons, Christopher J. Dy, David B. Bumpass, Eric C. Makhni, and Kevin J. Bozic

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Racial and socioeconomic disparities in hip fracture care, Christopher J. Dy, Joseph M. Lane, Ting Jung Pan, Michael L. Parks, and Stephen Lyman

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Rectal indomethacin alone versus indomethacin and prophylactic pancreatic stent placement for preventing pancreatitis after ERCP: Study protocol for a randomized controlled trial, Steven A. Edmundowicz and et al

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Differential regulation of interferon responses by Ebola and Marburg virus VP35 proteins, Megan R. Edwards, Gai Liu, Chad E. Mire, Suhas Sureshchandra, Priya Luthra, Benjamin Yen, Reed S. Shabman, Daisy W. Leung, Ilhem Messaoudi, Thomas W. Geisbert, Gaya K. Amarasinghe, and Christopher F. Basler

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LPS remodeling triggers formation of outer membrane vesicles in Salmonella., Wael Elhenawy, Michael Bording-Jorgenson, Ezequiel Valguarnera, M. Florencia Haurat, Eytan Wine, and Mario F. Feldman

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Preventing germ cell death by inactivating aryl hydrocarbon receptor (AHR), P Esakky and K H. Moley

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High prevalence of low bone mineral density and substantial bone loss over 4 years among HIV-infected persons in the era of modern antiretroviral therapy, Gerome V. Escota, Kristin Mondy, Tim Bush, Lois Conley, John T. Brooks, Nur Önen, Pragna Patel, Erna Milunka Kojic, Keith Henry, John Hammer, K. C. Wood, Kenneth A. Lichtenstein, and Edgar T. Overton

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Migratory CD103+ dendritic cells suppress helminth-driven type 2 immunity through constitutive expression of IL-12, Bart Evans, Roxane Tussiwand, Leentje Dreesen, Keke C. Fairfax, Stanley Ching-Cheng Huang, Amber M. Smith, Christina M. O'Neill, Wing Y. Lam, Brian T. Edelson, Joseph F. Urban Jr, and Kenneth M. Murphy

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A comparative study of automatic image segmentation algorithms for target tracking in MR-IGRT, Yuan Feng, Iwan Kawrakow, Jeff Olsen, Parag J. Parikh, Camille Noel, Omar Wooten, Dongsu Du, Sasa Mutic, and Yanle Hu

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Effect of cervical length recovery after laser surgery for twin-twin transfusion syndrome, Matthew Finneran, Lorene Temming, Megan Templin, and Courtney Stephenson

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Interactions between pluripotency factors specify cis-regulation in embryonic stem cells, Chris Fiore and Barak A. Cohen

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A recombinant positive control for serology diagnostic tests supporting elimination of Onchocerca volvulus, Peter U. Fischer and et al.

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Transcription start site scanning and the requirement for ATP during transcription initiation by RNA polymerase II, James Fishburn, Eric Galburt, and Steven Hahn

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Redundant Gs-coupled serotonin receptors regulate amyloid-β metabolism in vivo, Jonathan R. Fisher, Clare E. Wallace, Danielle L. Tripoli, Yvette I. Sheline, and John R. Cirrito

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Mycobacterium tuberculosis transcription machinery: Ready to respond to host attacks, Kelly Flentie, Ashley L. Garner, and Christina L. Stallings

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Severe cholestasis and bile acid nephropathy from anabolic steroids successfully treated with plasmapheresis, Avegail Flores, Rosemary Nustas, Hoang-Lan Nguyen, and Robert S. Rahimi

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A Plasmodium promiscuous T cell epitope delivered within the Ad5 hexon protein enhances the protective efficacy of a protein based malaria vaccine, Jairo Andres Fonseca, Monica Cabrera-Mora, Elena A. Kashentseva, John Paul Villegas, Alejandra Fernandez, Amelia Van Pelt, Igor P. Dmitriev, David T. Curiel, and Alberto Moreno