Journal
Nature Communications
Publication Date
2016
Volume
7
Inclusive Pages
10147
Document Type
Open Access Publication
DOI
10.1038/ncomms10147
Rights and Permissions
A. Khan, et al. 07 January 2016. Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes. Nature Communications. Art. No. 10147. DOI: 10.1038/ncomms10147. http://www.nature.com/ncomms/2016/160107/ncomms10147/full/ncomms10147.html
Recommended Citation
Khan, Asis; Behnke, Michael S.; Sibley, L David; and et al, "Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes." Nature Communications. 7, 10147. (2016).
https://digitalcommons.wustl.edu/open_access_pubs/4476
ncomms10147-s1.pdf (4474 kB)
Supplementary Figures 1-17, Supplementary Tables 1-2, Supplementary Methods and Supplementary References
ncomms10147-s2.xlsx (22 kB)
List of T. gondii strains used.
ncomms10147-s5.xlsx (387 kB)
List of CNV and tandem arrays for 16 reference T. gondii genomes.
ncomms10147-s6.xlsx (749 kB)
List of T. gondii genes with top dN/dS ratios.
ncomms10147-s7.xlsx (255 kB)
Analysis of shared and specific genes for N. caninum, T. gondii and H. hammondi.
ncomms10147-s8.xlsx (13 kB)
List of parasite specific gene families
ncomms10147-s12.xlsx (359 kB)
Summary of SPDs in conserved regions
ncomms10147-s3.txt (871 kB)
OrthoMCL clusters for E. tennella, S. neurona, N. caninum, T. gondii and H. hammondi.
ncomms10147-s4.txt (3209 kB)
OrthoMCL clusters for N. caninum, H. hammondi and 16 reference genomes of T. gondii.
ncomms10147-s9.zip (29864 kB)
List of SNPs found in all 62 strains
ncomms10147-s10.zip (3241 kB)
Conserved region SNPs
ncomms10147-s11.zip (5354 kB)
Supplementary Figures 1-17, Supplementary Tables 1-2, Supplementary Methods and Supplementary References
ncomms10147-s2.xlsx (22 kB)
List of T. gondii strains used.
ncomms10147-s5.xlsx (387 kB)
List of CNV and tandem arrays for 16 reference T. gondii genomes.
ncomms10147-s6.xlsx (749 kB)
List of T. gondii genes with top dN/dS ratios.
ncomms10147-s7.xlsx (255 kB)
Analysis of shared and specific genes for N. caninum, T. gondii and H. hammondi.
ncomms10147-s8.xlsx (13 kB)
List of parasite specific gene families
ncomms10147-s12.xlsx (359 kB)
Summary of SPDs in conserved regions
ncomms10147-s3.txt (871 kB)
OrthoMCL clusters for E. tennella, S. neurona, N. caninum, T. gondii and H. hammondi.
ncomms10147-s4.txt (3209 kB)
OrthoMCL clusters for N. caninum, H. hammondi and 16 reference genomes of T. gondii.
ncomms10147-s9.zip (29864 kB)
List of SNPs found in all 62 strains
ncomms10147-s10.zip (3241 kB)
Conserved region SNPs
ncomms10147-s11.zip (5354 kB)
