Journal

Nature Communications

Publication Date

2016

Volume

7

Inclusive Pages

12498

Document Type

Open Access Publication

DOI

10.1038/ncomms12498

ncomms12498-s1.pdf (14436 kB)
Supplementary Figures 1-8, Supplementary Notes 1-5, Supplementary Data 1-12, and Supplementary Software 1-2

ncomms12498-s16.pdf (258 kB)
Peer review file

ncomms12498-s2.xlsx (15 kB)
Clinical characteristics of cohort

ncomms12498-s3.xls (1260 kB)
Protein-coding (tier1) SNVs and Indels

ncomms12498-s4.xls (18271 kB)
Non-protein-coding (tier2-3) SNVs and Indels

ncomms12498-s5.xls (60 kB)
Sequencing Coverage and Purity

ncomms12498-s6.xls (288 kB)
Validated structural variants

ncomms12498-s7.xls (80 kB)
Gene fusions detected using INTEGRATE

ncomms12498-s8.xlsx (19543 kB)
Gene expression values (expressed in FPKM).

ncomms12498-s9.xlsx (12 kB)
Mutations detected in pre-malignant (DCIS) samples from BRC15

ncomms12498-s10.xls (32 kB)
Subclonal VAFs

ncomms12498-s11.xlsx (11 kB)
List of the 83 genes targeted by the breast cancer-related gene panel

ncomms12498-s12.xls (39 kB)
Mutations detected in targeted sequencing of extension cohort

ncomms12498-s13.xls (123 kB)
Differentially expressed genes between responders and non- responders

ncomms12498-s14.zip (6820 kB)
All data and scripts used for clonal clustering

ncomms12498-s15.zip (43 kB)

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