Applied and Environmental Microbiology
Open Access Publication
Weinstock, George and et al, ,"Transmission of Staphylococcus aureus from humans to green monkeys in the Gambia as revealed by whole-genome sequencing." Applied and Environmental Microbiology.82,19. 5910-5917. (2016).
A heat map showing the presence and absence of accessory genes related to host adaptation across all genomes (Fig. S1), neighbor-joining tree (Fig. S2), phylogenetic tree linked to a heat map (Fig. S3), summary of sampling information for three epidemiological classes in the study (Table S1), and a map indicating the sites for the isolates (Fig. S4).
zam999117421sd2.xlsx (14 kB)
Isolate metadata (Data Set S1).
zam999117421sd3.xlsx (123 kB)
Pairwise distance matrix showing the numbers of SNP differences within the core genome of isolates (Data Set S2).
zam999117421sd4.xlsx (3488 kB)
Presence (based on >85% homology) or absence of all accessory genes in all genomes (each row representing one gene and each column representing one isolate) (Data Set S3).
zam999117421sd5.xlsx (101 kB)
A pairwise matrix showing the numbers of shared accessory genomes between all genomes (shared content based on the presence of two genes with at least 85% sequence similarity in both isolates) (Data Set S4).