BMC biology

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Open Access Publication



12915_2020_743_MOESM1_ESM.xlsx (759 kB)
List of unannotated quail genes and their manual annotation

12915_2020_743_MOESM2_ESM.docx (2580 kB)
Supplementary Figures. S1-S11 and Tables S1–3

12915_2020_743_MOESM3_ESM.xlsx (30 kB)
Location of breakpoints between chicken and quail chromosomes

12915_2020_743_MOESM4_ESM.xlsx (8 kB)
Percent of quail genes with orthologs identified in related bird genomes

12915_2020_743_MOESM5_ESM.bed (2175 kB)
BED file containing location of ERVs in quail genome

12915_2020_743_MOESM6_ESM.bed (2847 kB)
BED file containing location of ERVs in turkey genome

12915_2020_743_MOESM7_ESM.xlsx (8 kB)
A comparative summary of assembled ERVs in quail, chicken and turkey

12915_2020_743_MOESM8_ESM.xlsx (11 kB)
List of selection signatures detected from the HSR / LSR lines

12915_2020_743_MOESM9_ESM.xlsx (44528 kB)
Statistics from photoperiod differential expression study

12915_2020_743_MOESM10_ESM.xlsx (11 kB)
Pathway analysis from photoperiod study

Supp11.txt (1 kB)
Sequences of cathelicidins and defensin genes identified in quail genome

12915_2020_743_MOESM12_ESM.xlsx (1658 kB)
List of differentially expressed genes, FDR < 0.05 and fold change > 1.6 in infection study

12915_2020_743_MOESM13_ESM.xlsx (64 kB)
Overrepresented GO terms in differentially expressed genes in infection study

12915_2020_743_MOESM14_ESM.xlsx (20 kB)
List of the cluster of genes upregulated in duck at day 1 during HPAI infection, with the corresponding fold changes in each species. NS = Not significantly differentially regulated

12915_2020_743_MOESM15_ESM.xlsx (25 kB)
Regulation of IFITM, MHC and TLR family genes in quail, chicken and duck following HPAI and LPAI infection

12915_2020_743_MOESM16_ESM.xlsx (8 kB)
Viral read presence in quail samples