GenSeed-HMM: A tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data

Authors

João M.P. Alves, University of Sao Paulo, Brazil
Andre L. de Oliveira, University of Sao Paulo, Brazil
Tatiana O.M. Sandberg, University of Sao Paulo, Brazil
Jaime L. Moreno-Gallego, Universidad de Los Andes - Colombia
Marcelo A.F. de Toledo, University of Sao Paulo, Brazil
Elisabeth M.M. de Moura, University of Sao Paulo, Brazil
Liliane S. Oliveira, University of Sao Paulo, Brazil
Alan M. Durham, University of Sao Paulo, Brazil
Dolores U. Mehnert, University of Sao Paulo, Brazil
Paolo M. de A. Zanotto, University of Sao Paulo, Brazil
Alejandro Reyes, Washington University School of Medicine in St. Louis
Arthur Gruber, University of Sao Paulo, Brazil

Journal

Frontiers in MIcrobiology

Publication Date

2016

Volume

7

Inclusive Pages

269

Document Type

Open Access Publication

DOI

10.3389/fmicb.2016.00269

Rights and Permissions

Alves JMP, de Oliveira AL, Sandberg TOM, Moreno-Gallego JL, de Toledo MAF, de Moura EMM, Oliveira LS, Durham AM, Mehnert DU, Zanotto PMA, Reyes A and Gruber A (2016) GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data. Front. Microbiol. 7:269. doi: 10.3389/fmicb.2016.00269

Recommended Citation

Alves, João M.P.; de Oliveira, Andre L.; Sandberg, Tatiana O.M.; Moreno-Gallego, Jaime L.; de Toledo, Marcelo A.F.; de Moura, Elisabeth M.M.; Oliveira, Liliane S.; Durham, Alan M.; Mehnert, Dolores U.; de A. Zanotto, Paolo M.; Reyes, Alejandro; and Gruber, Arthur, "GenSeed-HMM: A tool for progressive assembly using profile HMMs as seeds and its application in Alpavirinae viral discovery from metagenomic data." Frontiers in MIcrobiology. 7, 269. (2016).
https://digitalcommons.wustl.edu/open_access_pubs/4791