Journal
Elife
Publication Date
8-17-2022
Volume
11
First Page
e74104
Document Type
Open Access Publication
DOI
10.7554/eLife.74104
Rights and Permissions
Zaydman MA, Little AS, Haro F, Aksianiuk V, Buchser WJ, DiAntonio A, Gordon JI, Milbrandt J, Raman AS. Defining hierarchical protein interaction networks from spectral analysis of bacterial proteomes. Elife. 2022 Aug 17;11:e74104. doi: 10.7554/eLife.74104. Copyright Zaydman et al. This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.
Recommended Citation
Zaydman, Mark A; Little, Alexander S; Haro, Fidel; Aksianiuk, Valeryia; Buchser, William J; DiAntonio, Aaron; Gordon, Jeffrey I; Milbrandt, Jeffrey; and Raman, Arjun S, "Defining hierarchical protein interaction networks from spectral analysis of bacterial proteomes." Elife. 11, e74104 (2022).
https://digitalcommons.wustl.edu/oa_4/336
Supplementary file 1: Data pertaining to Figure 6A
elife-74104-supp2-v2.xlsx (114 kB)
Supplementary file 2: Data related to Figure 6—figure supplement 2
elife-74104-supp3-v2.xlsx (138 kB)
Supplementary file 3: Data related to Figure 6—figure supplement 3
elife-74104-supp4-v2.xlsx (427 kB)
Supplementary file 4: Data related to Figure 6—figure supplement 4
elife-74104-supp5-v2.xls (493 kB)
Supplementary file 5: Data related to Figure 7A,B and Figure 7—figure supplement 1
elife-74104-supp6-v2.xlsx (18 kB)
Supplementary file 6: Data related to gene co-occurrence, gene fusion, gene neighborhood, and co-expression data using pilA in Pseudomonas aeruginosa (PAO1) as a query protein
elife-74104-supp7-v2.xlsx (13 kB)
Supplementary file 7: Data related to Figure 7C
elife-74104-transrepform1-v2.docx (113 kB)
Transparent reporting form
elife-74104-figures-v2.pdf (15247 kB)
Figures and figure supplements
elife-74104-fig1-data1-v2 (2).zip (10639 kB)
DOGG matrix shown in Figure 1A
elife-74104-fig3-data1-v2.xlsx (638 kB)
NCBI taxonomic strings for each organism used to generate phylogenetic benchmarks
elife-74104-fig3-data2-v2.xlsx (2522 kB)
Benchmarks of protein-protein interactions (PPIs) in Escherichia coli K12
elife-74104-fig8-data1-v2.xlsx (147 kB)
Data and statistical support for random forest (RF) model validation studies, related to Figure 8Figure 8
