Journal
Elife
Publication Date
2022
Volume
11
First Page
e73358
Document Type
Open Access Publication
DOI
10.7554/eLife.73358
Rights and Permissions
eLife 2022;11:e73358 DOI: 10.7554/eLife.73358. © 2022, Hansen et al. This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.
Recommended Citation
Hansen, Jeffrey L.; Loell, Kaiser J.; and Cohen, Barak A., "A test of the pioneer factor hypothesis using ectopic liver gene activation." Elife. 11, e73358 (2022).
https://digitalcommons.wustl.edu/open_access_pubs/11407
elife-73358-supp1-v2.xlsx (9 kB)
Supplementary file 1 FOXA1 gene ontology analysis. Gene ontology terms, representative genes, and FDR values for liver-specific genes activated by FOXA1.
elife-73358-supp2-v2.xlsx (9 kB)
Supplementary file 2 HNF4A gene ontology analysis. Gene ontology terms, representative genes, and FDR values for liver-specific genes activated by HNF4A.
elife-73358-supp3-v2.xlsx (9 kB)
Supplementary file 3 Primer sequences. Primer sequences used for plasmid construction and qPCR analysis.
elife-73358-supp4-v2.xlsx (9 kB)
Supplementary file 4 ATAC-sequencing quality summary statistics. Sequencing statistics for each ATAC-sequencing run, including the read length, read count, peak count, and Fraction of Reads in Peaks (FRiP).
elife-73358-supp5-v2.xlsx (9 kB)
Supplementary file 5 CUT&Tag sequencing quality summary statistics. Sequencing statistics for each CUT&Tag run, including the read length, read count, peak count, and Fraction of Reads in Peaks (FRiP).
Figure and figure supplements.pdf (7733 kB)
elife-73358-transrepform1-v2.docx (246 kB)
Transparent reporting form
Supplementary file 1 FOXA1 gene ontology analysis. Gene ontology terms, representative genes, and FDR values for liver-specific genes activated by FOXA1.
elife-73358-supp2-v2.xlsx (9 kB)
Supplementary file 2 HNF4A gene ontology analysis. Gene ontology terms, representative genes, and FDR values for liver-specific genes activated by HNF4A.
elife-73358-supp3-v2.xlsx (9 kB)
Supplementary file 3 Primer sequences. Primer sequences used for plasmid construction and qPCR analysis.
elife-73358-supp4-v2.xlsx (9 kB)
Supplementary file 4 ATAC-sequencing quality summary statistics. Sequencing statistics for each ATAC-sequencing run, including the read length, read count, peak count, and Fraction of Reads in Peaks (FRiP).
elife-73358-supp5-v2.xlsx (9 kB)
Supplementary file 5 CUT&Tag sequencing quality summary statistics. Sequencing statistics for each CUT&Tag run, including the read length, read count, peak count, and Fraction of Reads in Peaks (FRiP).
Figure and figure supplements.pdf (7733 kB)
elife-73358-transrepform1-v2.docx (246 kB)
Transparent reporting form
