Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities

Authors

John Martin, Washington University School of Medicine in St. Louis
Sean Sykes, The Broad Institute of MIT and Harvard, Cambridge
Sarah Young, The Broad Institute of MIT and Harvard, Cambridge
Karthik Kota, Washington University School of Medicine in St. Louis
Ravi Sanka, J. Craig Venter Institute, Rockville, Maryland
Nihar Sheth, Virginia Commonwealth University
Joshua Orvis, University of Maryland - Baltimore
Erica Sodergren, Washington University School of Medicine in St. Louis
Zhengyuan Wang, Washington University School of Medicine in St. Louis
George M. Weinstock, Washington University School of Medicine in St. Louis
Makedonka Mitreva, Washington University School of Medicine in St. Louis

Journal

PLoS One

Publication Date

2012

Volume

7

Issue

6

Inclusive Pages

e36427

Document Type

Open Access Publication

DOI

10.1371/journal.pone.0036427

Rights and Permissions

Martin J, Sykes S, Young S, Kota K, Sanka R, et al. (2012) Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities. PLoS ONE 7(6): e36427. doi:10.1371/journal.pone.0036427

Recommended Citation

Martin, John; Sykes, Sean; Young, Sarah; Kota, Karthik; Sanka, Ravi; Sheth, Nihar; Orvis, Joshua; Sodergren, Erica; Wang, Zhengyuan; Weinstock, George M.; and Mitreva, Makedonka, "Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities." PLoS One. 7, 6. e36427. (2012).
https://digitalcommons.wustl.edu/open_access_pubs/1161