Journal
Malaria Journal
Publication Date
2015
Volume
14
Inclusive Pages
296
Document Type
Open Access Publication
DOI
10.1186/s12936-015-0814-0
Rights and Permissions
Lauron et al. Malar J (2015) 14:296 DOI 10.1186/s12936-015-0814-0
Recommended Citation
Lauron, Elvin J.; Yeang, Han Xian Aw; Taffner, Samantha M.; and Sehgal, Ravinder N.M., "De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification." Malaria Journal. 14, 296. (2015).
https://digitalcommons.wustl.edu/open_access_pubs/4019
s12936-015-0814-0-s1.doc (37561 kB)
Plasmodium gallinaceum de novo transcriptome assembly without quality trimming and no subsequent filtering of transcripts
s12936-015-0814-0-s2.doc (131698 kB)
Plasmodium gallinaceum de novo transcriptome assembly without quality trimming and with subsequent filtering of transcripts
s12936-015-0814-0-s3.doc (17027 kB)
Plasmodium gallinaceum de novo transcriptome assembly with quality trimming and no subsequent filtering of transcripts
s12936-015-0814-0-s4.doc (24373 kB)
Plasmodium gallinaceum de novo transcriptome assembly with quality trimming and with subsequent filtering of transcripts
s12936-015-0814-0-s5.docx (64 kB)
Genes and the corresponding GenBank Accession numbers and Gene IDs for the parasite taxa used in the study
s12936-015-0814-0-s6.docx (29 kB)
RSEM-eval score of various assemblies
s12936-015-0814-0-s7.xlsx (201 kB)
Annotation file for the assembly without quality trimming
s12936-015-0814-0-s8.xls (546 kB)
Mapping file for the assembly without quality trimming
s12936-015-0814-0-s9.xls (4375 kB)
Sequence table file for the assembly without quality trimming
s12936-015-0814-0-s10.xls (74 kB)
KEGG pathway file for the assembly without quality trimming
s12936-015-0814-0-s11.tif (103774 kB)
Phylogeny of Plasmodium genes
s12936-015-0814-0-s12.xlsx (200 kB)
Annotation file for the assembly with quality trimming
s12936-015-0814-0-s13.xlsx (242 kB)
Mapping file for the assembly with quality trimming
s12936-015-0814-0-s14.xlsx (2538 kB)
Sequence table file for the assembly with quality trimming
s12936-015-0814-0-s15.xlsx (28 kB)
KEGG pathway file for the assembly with quality trimming
s12936-015-0814-0-s16.pdf (50 kB)
Pairwise comparisons of genetic distances, and the proportion of nonsynonymous differences per nonsynonymous site and synonymous differences per synonymous site between Plasmodium species
Plasmodium gallinaceum de novo transcriptome assembly without quality trimming and no subsequent filtering of transcripts
s12936-015-0814-0-s2.doc (131698 kB)
Plasmodium gallinaceum de novo transcriptome assembly without quality trimming and with subsequent filtering of transcripts
s12936-015-0814-0-s3.doc (17027 kB)
Plasmodium gallinaceum de novo transcriptome assembly with quality trimming and no subsequent filtering of transcripts
s12936-015-0814-0-s4.doc (24373 kB)
Plasmodium gallinaceum de novo transcriptome assembly with quality trimming and with subsequent filtering of transcripts
s12936-015-0814-0-s5.docx (64 kB)
Genes and the corresponding GenBank Accession numbers and Gene IDs for the parasite taxa used in the study
s12936-015-0814-0-s6.docx (29 kB)
RSEM-eval score of various assemblies
s12936-015-0814-0-s7.xlsx (201 kB)
Annotation file for the assembly without quality trimming
s12936-015-0814-0-s8.xls (546 kB)
Mapping file for the assembly without quality trimming
s12936-015-0814-0-s9.xls (4375 kB)
Sequence table file for the assembly without quality trimming
s12936-015-0814-0-s10.xls (74 kB)
KEGG pathway file for the assembly without quality trimming
s12936-015-0814-0-s11.tif (103774 kB)
Phylogeny of Plasmodium genes
s12936-015-0814-0-s12.xlsx (200 kB)
Annotation file for the assembly with quality trimming
s12936-015-0814-0-s13.xlsx (242 kB)
Mapping file for the assembly with quality trimming
s12936-015-0814-0-s14.xlsx (2538 kB)
Sequence table file for the assembly with quality trimming
s12936-015-0814-0-s15.xlsx (28 kB)
KEGG pathway file for the assembly with quality trimming
s12936-015-0814-0-s16.pdf (50 kB)
Pairwise comparisons of genetic distances, and the proportion of nonsynonymous differences per nonsynonymous site and synonymous differences per synonymous site between Plasmodium species
