Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

Authors

• Erica K. Barnell, Washington University School of Medicine in St. Louis
• Peter Ronning, Washington University School of Medicine in St. Louis
• Katie M. Campbell, Washington University School of Medicine in St. Louis
• Kilannin Krysiak, Washington University School of Medicine in St. Louis
• Benjamin J. Ainscough, Washington University School of Medicine in St. Louis
• Lana M. Sheta, Washington University School of Medicine in St. Louis
• Shahil P. Pema, Washington University School of Medicine in St. Louis
• Alina D. Schmidt, Washington University School of Medicine in St. Louis
• Megan Richters, Washington University School of Medicine in St. Louis
• Kelsy C. Cotto, Washington University School of Medicine in St. Louis
• Arpad M. Danos, Washington University School of Medicine in St. Louis
• Cody Ramirez, Washington University School of Medicine in St. Louis
• Zachary L. Skidmore, Washington University School of Medicine in St. Louis
• Nicholas C. Spies, Washington University School of Medicine in St. Louis
• Jasreet Hundal, Washington University School of Medicine in St. Louis
• Malik S. Sediqzad, Washington University School of Medicine in St. Louis
• Jason Kunisaki, Washington University School of Medicine in St. Louis
• Felicia Gomez, Washington University School of Medicine in St. Louis
• Lee Trani, Washington University School of Medicine in St. Louis
• Matthew Matlock, Washington University School of Medicine in St. Louis
• Alex H. Wagner, Washington University School of Medicine in St. Louis
• S. Joshua Swamidass, Washington University School of Medicine in St. Louis
• Malachi Griffith, Washington University School of Medicine in St. Louis
• Obi L. Griffith, Washington University School of Medicine in St. Louis

Journal

Genetics in Medicine

Publication Date

2019

Volume

21

Issue

4

First Page

972

Last Page

981

Document Type

Open Access Publication

DOI

10.1038/s41436-018-0278-z

Rights and Permissions

Barnell EK, Ronning P, Campbell KM, Krysiak K, Ainscough BJ, Sheta LM, Pema SP, Schmidt AD, Richters M, Cotto KC, Danos AM, Ramirez C, Skidmore ZL, Spies NC, Hundal J, Sediqzad MS, Kunisaki J, Gomez F, Trani L, Matlock M, Wagner AH, Swamidass SJ, Griffith M, Griffith OL. Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples. Genet Med. 2019 Apr;21(4):972-981. doi: 10.1038/s41436-018-0278-z. Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, and provide a link to the Creative Commons license. You do not have permission under this license to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

Recommended Citation

Barnell, Erica K.; Ronning, Peter; Campbell, Katie M.; Krysiak, Kilannin; Ainscough, Benjamin J.; Sheta, Lana M.; Pema, Shahil P.; Schmidt, Alina D.; Richters, Megan; Cotto, Kelsy C.; Danos, Arpad M.; Ramirez, Cody; Skidmore, Zachary L.; Spies, Nicholas C.; Hundal, Jasreet; Sediqzad, Malik S.; Kunisaki, Jason; Gomez, Felicia; Trani, Lee; Matlock, Matthew; Wagner, Alex H.; Swamidass, S. Joshua; Griffith, Malachi; and Griffith, Obi L., "Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples." Genetics in Medicine. 21, 4. 972 - 981. (2019).
https://digitalcommons.wustl.edu/open_access_pubs/8247