Journal
BMC biology
Publication Date
2-12-2020
Volume
18
Issue
1
First Page
14
Document Type
Open Access Publication
DOI
10.1186/s12915-020-0743-4
Rights and Permissions
Morris, K.M., Hindle, M.M., Boitard, S. et al. The quail genome: insights into social behaviour, seasonal biology and infectious disease response. BMC Biol 18, 14 (2020). https://doi.org/10.1186/s12915-020-0743-4 This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
Recommended Citation
Morris, Katrina M; Hillier, LaDeana W; Minx, Patrick; Tomlinson, Chad; and et al, "The quail genome: Insights into social behaviour, seasonal biology and infectious disease response." BMC biology. 18, 1. 14 (2020).
https://digitalcommons.wustl.edu/open_access_pubs/9439
List of unannotated quail genes and their manual annotation
12915_2020_743_MOESM2_ESM.docx (2580 kB)
Supplementary Figures. S1-S11 and Tables S1–3
12915_2020_743_MOESM3_ESM.xlsx (30 kB)
Location of breakpoints between chicken and quail chromosomes
12915_2020_743_MOESM4_ESM.xlsx (8 kB)
Percent of quail genes with orthologs identified in related bird genomes
12915_2020_743_MOESM5_ESM.bed (2175 kB)
BED file containing location of ERVs in quail genome
12915_2020_743_MOESM6_ESM.bed (2847 kB)
BED file containing location of ERVs in turkey genome
12915_2020_743_MOESM7_ESM.xlsx (8 kB)
A comparative summary of assembled ERVs in quail, chicken and turkey
12915_2020_743_MOESM8_ESM.xlsx (11 kB)
List of selection signatures detected from the HSR / LSR lines
12915_2020_743_MOESM9_ESM.xlsx (44528 kB)
Statistics from photoperiod differential expression study
12915_2020_743_MOESM10_ESM.xlsx (11 kB)
Pathway analysis from photoperiod study
Supp11.txt (1 kB)
Sequences of cathelicidins and defensin genes identified in quail genome
12915_2020_743_MOESM12_ESM.xlsx (1658 kB)
List of differentially expressed genes, FDR < 0.05 and fold change > 1.6 in infection study
12915_2020_743_MOESM13_ESM.xlsx (64 kB)
Overrepresented GO terms in differentially expressed genes in infection study
12915_2020_743_MOESM14_ESM.xlsx (20 kB)
List of the cluster of genes upregulated in duck at day 1 during HPAI infection, with the corresponding fold changes in each species. NS = Not significantly differentially regulated
12915_2020_743_MOESM15_ESM.xlsx (25 kB)
Regulation of IFITM, MHC and TLR family genes in quail, chicken and duck following HPAI and LPAI infection
12915_2020_743_MOESM16_ESM.xlsx (8 kB)
Viral read presence in quail samples
