Authors

Daniel Cui Zhou, Washington University School of Medicine in St. Louis
Reyka G Jayasinghe, Washington University School of Medicine in St. Louis
Siqi Chen, Washington University School of Medicine in St. Louis
John M Herndon, Washington University School of Medicine in St. Louis
Michael D Iglesia, Washington University School of Medicine in St. Louis
Pooja Navale, Washington University School of Medicine in St. Louis
Michael C Wendl, Washington University School of Medicine in St. Louis
Wagma Caravan, Washington University School of Medicine in St. Louis
Kazuhito Sato, Washington University School of Medicine in St. Louis
Erik Storrs, Washington University School of Medicine in St. Louis
Chia-Kuei Mo, Washington University School of Medicine in St. Louis
Jingxian Liu, Washington University School of Medicine in St. Louis
Austin N Southard-Smith, Washington University School of Medicine in St. Louis
Yige Wu, Washington University School of Medicine in St. Louis
Nataly Naser Al Deen, Washington University School of Medicine in St. Louis
John M Baer, Washington University School of Medicine in St. Louis
Robert S Fulton, Washington University School of Medicine in St. Louis
Matthew A Wyczalkowski, Washington University School of Medicine in St. Louis
Ruiyang Liu, Washington University School of Medicine in St. Louis
Catrina C Fronick, Washington University School of Medicine in St. Louis
Lucinda A Fulton, Washington University School of Medicine in St. Louis
Andrew Shinkle, Washington University School of Medicine in St. Louis
Lisa Thammavong, Washington University School of Medicine in St. Louis
Houxiang Zhu, Washington University School of Medicine in St. Louis
Hua Sun, Washington University School of Medicine in St. Louis
Liang-Bo Wang, Washington University School of Medicine in St. Louis
Yize Li, Washington University School of Medicine in St. Louis
Chong Zuo, Washington University School of Medicine in St. Louis
Joshua F McMichael, Washington University School of Medicine in St. Louis
Sherri R Davies, Washington University School of Medicine in St. Louis
Elizabeth L Appelbaum, Washington University School of Medicine in St. Louis
Keenan J Robbins, Washington University School of Medicine in St. Louis
Sara E Chasnoff, Washington University School of Medicine in St. Louis
Xiaolu Yang, Washington University School of Medicine in St. Louis
Ashley N Reeb, Washington University School of Medicine in St. Louis
Clara Oh, Washington University School of Medicine in St. Louis
Mamatha Serasanambati, Washington University School of Medicine in St. Louis
Preet Lal, Washington University School of Medicine in St. Louis
Rajees Varghese, Washington University School of Medicine in St. Louis
Jay R Mashl, Washington University School of Medicine in St. Louis
Jennifer Ponce, Washington University School of Medicine in St. Louis
Nadezhda V Terekhanova, Washington University School of Medicine in St. Louis
Lijun Yao, Washington University School of Medicine in St. Louis
Rita Jui-Hsien Lu, Washington University School of Medicine in St. Louis
Julie K Schwarz, Washington University School of Medicine in St. Louis
Sidharth V Puram, Washington University School of Medicine in St. Louis
Albert H Kim, Washington University School of Medicine in St. Louis
Sheng-Kwei Song, Washington University School of Medicine in St. Louis
Kooresh I Shoghi, Washington University School of Medicine in St. Louis
William G Hawkins, Washington University School of Medicine in St. Louis
Samuel Achilefu, Washington University School of Medicine in St. Louis
Milan G Chheda, Washington University School of Medicine in St. Louis
Stephen T Oh, Washington University School of Medicine in St. Louis
William E Gillanders, Washington University School of Medicine in St. Louis
Feng Chen, Washington University School of Medicine in St. Louis
David G DeNardo, Washington University School of Medicine in St. Louis
Ryan C Fields, Washington University School of Medicine in St. Louis
Li Ding, Washington University School of Medicine in St. Louis
et al

Journal

Nature Genetics

Publication Date

9-1-2022

Volume

54

Issue

9

First Page

1390

Last Page

1405

Document Type

Open Access Publication

DOI

10.1038/s41588-022-01157-1

41588_2022_1157_MOESM1_ESM.pdf (1283 kB)
Supplementary Note and Fig. 1

41588_2022_1157_MOESM2_ESM.pdf (3215 kB)
Reporting Summary

41588_2022_1157_MOESM3_ESM.xlsx (48 kB)
Supplementary Tables 1–5

41588_2022_1157_MOESM4_ESM.xlsx (31703 kB)
Bulk omics data including somatic and germline variants and proteogenomics data

41588_2022_1157_MOESM5_ESM.txt (112915 kB)
CNVkit raw copy number calls across the sample set

41588_2022_1157_MOESM6_ESM.xlsx (15 kB)
Total cell count of transitional cell populations and mutation mapping across samples

41588_2022_1157_MOESM7_ESM.xlsx (979 kB)
Differentially expressed genes (DEGs) identified by annotating spatial transcriptomics spots using the Loupe Browser and Seurat. FindAllMarkers function from Seurat was used to identify DEGs

41588_2022_1157_MOESM8_ESM.txt (7 kB)
Tumor purity estimates predicted by ABSOLUTE across sample cohort

Share

COinS