StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities

Authors

Lucas R van Dijk, Broad Institute
Bruce J Walker, Broad Institute
Timothy J Straub, Broad Institute
Colin J Worby, Broad Institute
Alexandra Grote, Broad Institute
Henry L Schreiber 4th, Washington University School of Medicine in St. Louis
Christine Anyansi, Delft University of Technology
Amy J Pickering, University of California - Berkeley
Scott J Hultgren, Washington University School of Medicine in St. Louis
Abigail L Manson, Broad Institute
Thomas Abeel, Broad Institute
Ashlee M Earl, Broad Institute

Journal

Genome biology

Publication Date

3-7-2022

Volume

23

Issue

1

First Page

74

Document Type

Open Access Publication

DOI

10.1186/s13059-022-02630-0

Rights and Permissions

van Dijk, L.R., Walker, B.J., Straub, T.J. et al. StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities. Genome Biol 23, 74 (2022). https://doi.org/10.1186/s13059-022-02630-0 This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

Recommended Citation

van Dijk, Lucas R; Walker, Bruce J; Straub, Timothy J; Worby, Colin J; Grote, Alexandra; Schreiber, Henry L 4th; Anyansi, Christine; Pickering, Amy J; Hultgren, Scott J; Manson, Abigail L; Abeel, Thomas; and Earl, Ashlee M, "StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities." Genome biology. 23, 1. 74 (2022).
https://digitalcommons.wustl.edu/oa_4/811

Additional Links

Supplemental material is available for this article at publisher site.