Submissions from 2005
Diverse phenotypes resulting from polyphosphate kinase gene (ppk1) inactivation in different strains of Helicobacter pylori, Shumin Tan, Cresson D. Fraley, Maojun Zhang, Daiva Dailidiene, Arthur Kornberg, and Douglas E. Berg
Quality determination and the repair of poor quality spots in array experiments, Brian DM Tom, Walter R. Gilks, Elizabeth T. Brooke-Powell, and James W. Ajioka
DAP12 (KARAP) amplifies inflammation and increases mortality from endotoxemia and septic peritonitis, Isaiah R. Turnbull, Jonathan E. McDunn, Toshiyuki Takai, R. Reid Townsend, J. Perren Cobb, and Marco Colonna
Laparoscopic ureterocalicostomy: Development of a technique simplified by application of nitinol clips and a wet monopolar electrosurgery device, Richard Vanlangendonck, Ramakrishna Venkatesh, Christopher Vulin, Sejal Quayle, Kevin Morrissey, and Jaime Landman
Genetic networks controlling retinal injury, Felix R. Vazquez-Chona, Amna N. Khan, Chun K. Chan, Anthony N. Moore, Pramod K. Dash, M. Rosario Hernandez, Lu Lu, Elissa J. Chesler, Kenneth F. Manly, Robert W. Williams, and Eldon E. Geisert Jr.
Impact of a double-pigtail stent on ureteral peristalsis in the porcine model: Initial studies using a novel implantable magnetic sensor, Ramakrishna Venkatesh, Jaime Landman, Scott D. Minor, David I. Lee, Jamil Rehman, Richard Vanlangendonck, Maged Ragab, Kevin Morrissey, Chandru P. Sundaram, and Ralph V. Clayman
Determination of cell viability after laparoscopic tissue stapling in a porcine model, Ramakrishna Venkatesh, Jamil Rehman, Jaime Landman, David Lee, Maged E. Ragab, Chandru P. Sundaram, Peter A. Humphrey, and Ralph V. Clayman
PGC-1α coactivates PDK4 gene expression via the orphan nuclear receptor ERRα: A mechanism for transcriptional control of muscle glucose metabolism, Adam R. Wende, Janice M. Huss, Paul J. Schaeffer, Vincent Giguere, and Daniel P. Kelly
Extension of Lander-Waterman theory for sequencing filtered DNA libraries, Michael C. Wendl and W Brad Barbazuk
Gliding motility leads to active cellular invasion by Cryptosporidium parvum sporozoites, Dawn M. Wetzel, Joann Schmidt, Mark S. Kuhlenschmidt, J.P. Dubey, and L. David Sibley
Choice of residential location: Chance, family influences, or genes?, John B. Whitfield, Gu Zhu, Andrew C. Heath, and Nicholas G. Martin
The repetitive landscape of the chicken genome, Thomas Wicker, Jon S. Robertson, Stefan R. Schulze, F. Alex Feltus, Vincent Magrini, Jason A. Morrison, Elaine R. Mardis, Richard K. Wilson, Daniel G. Peterson, Andrew H. Paterson, and Robert Ivarie
Cholesterol dependence of HTLV-I infection, Matthew M. Wielgosz, Daniel A. Rauch, Kathryn S. Jones, Frank W. Ruscetti, and Lee Ratner
Uropathogenic Escherichia coli flagella aid in efficient urinary tract colonization, Kelly J. Wright, Patrick C. Seed, and Scott J. Hultgren
Macrophage migration inhibitory factor stimulated by Helicobacter pylori increases proliferation of gastric epithelial cells, Harry Hua-Xiang Xia, Shiu Kum Lam, Annie O. O. Chan, Marie Chia Mi Lin, Hsiang Fu Kung, Keiji Ogura, Douglas E. Berg, and Benjamin C. Y. Wong
Coordinate control of axon defasciculation and myelination by laminin-2 and -8, Dongren Yang, Jesse Bierman, Yukie S. Tarumi, Yong-Ping Zhong, Reshma Rangwala, Thomas M. Proctor, Yuko Miyagoe-Suzuki, Shin'ichi Takeda, Jeffrey H. Miner, Larry S. Sherman, Bruce G. Gold, and Bruce L. Patton
Transcriptional repression of the Neurofibromatosis-1 tumor suppressor by the t(8;21) fusion protein, Genyan Yang, Waleed Khalaf, Louis van de Locht, Joop H. Jansen, Meihua Gao, Mary Ann Thompson, Bert A. van der Reijden, David H. Gutmann, Ruud Delwel, D. Wade Clapp, and Scott W. Hiebert
The ponticulus posticus: Implications for screw insertion into the first cervical lateral mass, Jason P. Young, Paul H. Young, Paul A. Anderson, and K. Daniel Riew
Shiga toxin is transported from the endoplasmic reticulum following interaction with the luminal chaperone HEDJ/ERdj3, Min Yu and David B. Haslam
Divalent cation sensitivity of BK channel activation supports the existence of three distinct binding sites, Xu-Hui Zeng, Xiao-Ming Xia, and Christopher J. Lingle
Submissions from 2004
Antimicrobial use and the influence of inadequate empiric antimicrobial therapy on the outcomes of nosocomial bloodstream infections in a neonatal intensive care unit, Anucha Apisarnthanarak, Galit Holzmann-Pazgal, Aaron Hamvas, Margaret A. Olson, and Victoria J. Fraser
A novel missense mutation in the gene for gap-junction protein α3 (GJA3) associated with autosomal dominant “nuclear punctate” cataracts linked to chromosome 13q, Thomas M. Bennett, Donna S. Mackay, Harry L.S. Knopf, and Alan Shiels
Polyphosphoinositides-dependent regulation of the osteoclast actin cytoskeleton and bone resorption, Rajat S. Biswas, De Anna Baker, Keith A. Hruska, and Meenakshi A. Chellaiah
Characterization of a defensin from the sand fly Phlebotomus duboscqi induced by challenge with bacteria or the protozoan parasite Leishmania major, Nathalie Boulanger, Carl Lowenberger, Petr Volf, Raul Ursic, Lucie Sigutova, Laurence Sabatier, Milena Svobodova, Stephen M. Beverley, Gerald Spath, Reto Brun, Bernard Pesson, and Philippe Bulet
ARF impedes NPM/B23 shuttling in an Mdm2-sensitive tumor suppressor pathway, Suzanne N. Brady, Yue Yu, Leonard B. Maggi Jr., and Jason D. Weber
Contribution of glutathione peroxidase to the virulence of streptococcus pyogenes, Audrey Brenot, Katherine Y. King, Blythe Janowiak, Owen Griffith, and Michael G. Caparon
What's new in spine surgery, Keith H. Bridwell, Paul A. Anderson, Scott D. Boden, Alexander R. Vaccaro, and Jack E. Zigler
Pedicle subtraction osteotomy for the treatment of fixed sagittal imbalance: Surgical technique., Keith H. Bridwell, Stephen J. Lewis, Anthony Rinella, Lawrence G. Lenke, Christy Baldus, and Kathy Blanke
Evaluation of a real-time PCR assay using the LightCycler system for detection of parvovirus B19 DNA, Richard S. Buller and Gregory Storch
Evolutionary and functional relationships among the nontypeable Haemophilus influenzae HMW family of adhesins, Amy Z. Buscher, Katie Burmeister, Stephen J. Barenkamp, and Joseph W. St. Geme III
Type I Interferon Sensitizes Lymphocytes to Apoptosis and Reduces Resistance to Listeria Infection, Javier A. Carrero, Boris Calderon, and Emil R. Unanue
Differential requirements for Vav proteins in DAP10- and ITAM-mediated NK cell cytotoxicity, Marina Cella, Keiko Fujikawa, Ilaria Tassi, Sunjin Kim, Kevin Latinis, Shinzo Nishi, Wayne Yokoyama, Marco Colonna, and Wojciech Swat
Type III Secretion System Genes in Clinical Aeromonas Isolates, M. R. Chacón, L. Soler, E. A. Groisman, J. Guarro, and M. J. Figueras
Multiplex PCR assay for rapid detection and genotyping of Helicobacter pylori directly from biopsy specimens, Santanu Chattopadhyay, Rajashree Patra, T. Ramamurthy, Abhijit Chowdhury, Amal Santra, G. K. Dhali, S. K. Bhattacharya, Douglas E. Berg, G. Balakrish Nair, and Asish K. Mukhopadhyay
Helicobacter acinonychis: Genetic and rodent infection studies of a Helicobacter pylori-like gastric pathogen of cheetahs and other big cats, Daiva Dailidiene, Keiji Ogura, Maojun Zhang, Asish K. Mukhopadhyay, Kathryn A. Eaton, Giovanni Cattoli, Johannes G. Kusters, and Douglas E. Berg
Distinct roles for the AAA ATPases NSF and p97 in the secretory pathway, Seema Dalal, Meredith F.N. Rosser, Douglas M. Cyr, and Phyllis I. Hanson
Perceptual ‘‘read-out’’ of conjoined direction and disparity maps in extrastriate area MT, Gregory C. DeAngelis and William T. Newsome
Visual activation in prefrontal cortex is stronger in monkeys than in humans, Katrien Denys, Wim Vanduffel, Denis Fize, Koen Nelissen, Hiromasa Sawamura, Svetlana Georgieva, Rufin Vogels, David Van Essen, and Guy A. Orban
EAnnot: A genome annotation tool using experimental evidence, Li Ding, Aniko Sabo, Nicolas Berkowicz, Rekha R. Meyer, Yoram Shotland, Mark R. Johnson, Kymberlie H. Pepin, Richard K. Wilson, and John Spieth
Absent posterior tibial artery associated with idiopathic clubfoot: A report of two cases, Matthew B. Dobbs, J. Eric Gordon, and Perry L. Schoenecker
Use of an intramedullary rod for treatment of congenital pseudarthrosis of the tibia: A long-term follow-up study, Matthew B. Dobbs, Margaret M. Rich, J. Eric Gordon, Deborah A. Szymanski, and Perry L. Schoenecker
Factors Predictive of Outcome after Use of the Ponseti Method for the Treatment of Idiopathic Clubfeet, Matthew B. Dobbs, J. R. Rudzki, Derek B. Purcell, Tim Walton, Kristina R. Porter, and Christina A. Gurnett
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction, Robin D. Dowell and Sean R. Eddy
Protective role of interleukin-6 during Yersinia enterocolitica infection is mediated through the modulation of inflammatory cytokines, Peter H. Dube, Scott A. Handley, James Lewis, and Virginia L. Miller
Accurate Identification of adverse outcomes after cervical spine surgery, Charles C. Edwards II, Yekaterina Karpitskaya, Chuck Cha, John G. Heller, Carl Lauryssen, S. Timothy Yoon, and K. Daniel Riew
RNAi-mediated Hip1R silencing results in stable association between the endocytic machinery and the actin assembly machinery, Åsa E.Y. Engqvist-Goldstein, Claire X. Zhang, Sebastien Carreno, Consuelo Barroso, John E. Heuser, and David G. Drubin
Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae, Justin C. Fay, Heather L. McCullough, Paul D. Sniegowski, and Michael B. Eisen
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing, Terrence S. Furey, Mark Diekhans, Yontao Lu, Tina A. Graves, Lachlan Oddy, Jennifer Randall-Maher, LaDeana W. Hillier, Richard K. Wilson, and David Haussler
Langerhans cell histiocytosis of the spine in children: Long-term follow-up, Sumeet Garg, Samir Mehta, and John P. Dormans
Novel transcription regulatory elements in Caenorhabditis elegans muscle genes, Debraj GuhaThakurta, Lawrence A. Schriefer, Robert H. Waterston, and Gary D. Stormo
Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations, Kathleen B. Hall and Jeremy Williams
Population genetic analysis of Bartonella bacilliformis isolates from areas of Peru where Carrion's disease is endemic and epidemic, Tina M. Hambuch, Scott A. Handley, Barbara Ellis, Judith Chamberlin, Sofia Romero, and Russell Regnery
Pancreas and kidney transplantation using embryonic donor organs, Marc R. Hammerman
Characterization of Oral Yersinia enterocolitica infection in three different strains of inbred mice, Scott A. Handley, Peter H. Dube, Paula A. Revell, and Virginia L. Miller
Human intraocular penetration pharmacokinetics of moxifloxacin 0.5% via topical and collagen shield routes of administration, Seenu M. Hariprasad, William F. Mieler, Gaurav K. Shah, Kevin J. Blinder, Rajendra S. Apte, Nancy M. Holekamp, Matthew A. Thomas, Jingduan Chi, and Randall A. Prince
SH2D1A regulates T-dependent humoral autoimmunity, Jonathan D. Hron, Liron Caplan, Andrea J. Gerth, Pamela L. Schwartzberg, and Stanford L. Peng
Genomic instability and enhanced radiosensitivity in Hsp70.1- and Hsp70.3-deficient mice, Clayton R. Hunt, David J. Dix, Girdhar G. Sharma, Raj K. Pandita, Arun Gupta, Margo Funk, and Tej K. Pandita
Duplex doppler sonographic assessment of the effects of diethylcarbamazine and albendazole therapy on adult filarial worms and adjacent host tissues in bancroftian filariasis, Omar Hussein, Maged El Setouhy, Ehab S. Ahmed, Amr M. Kandil, Reda M.R. Ramzy, Hanan Helmy, and Gary J. Weil
Estrogen-related receptor α directs peroxisome proliferator-activated receptor α signaling in the transcriptional control of energy metabolism in cardiac and skeletal muscle, Janice M. Huss, Ines Pineda Torra, Bart Staels, Vincent Giguere, and Daniel P. Kelly
The association of radial deficiency with thumb hypoplasia, Michelle A. James, Hillary D. Green, H. Relton McCarroll Jr., and Paul R. Manske
Residents should not independently perform focused abdominal sonography for trauma after 10 training examinations, Timothy Jang, Sanford Sineff, Rosanne Naunheim, and Chandra Aubin
Evolutionary dynamics of insertion sequences in Helicobacter pylori, Awdhesh Kalia, Asish K. Mukhopadhyay, Giedrius Dailide, Yoshiyki Ito, Takeshi Azuma, Benjamin C. Y. Wong, and Douglas E. Berg
Regulatory network connecting two glucose signal transduction pathways in saccharomyces cerevisiae, Aneta Kaniak, Zhixiong Xue, Daniel Macool, Jeong-Ho Kim, and Mark Johnston
Thermodynamic phase plane analysis of ventricular contraction and relaxation, Mustafa Karamanoglu and Sándor J. Kovács
A mutation in a functional Sp1 binding site of the telomerase RNA gene (hTERC) promoter in a patient with Paroxysmal Nocturnal Haemoglobinuria, W Nicol Keith, Tom Vulliamy, Jiangqin Zhao, Cem Ar, Can Erzik, Alan Bilsland, Birsen Ulku, Anna Marrone, Philip J. Mason, Monica Bessler, Nedime Serakinci, and Inderjeet Dokal
Survey of knowledge, beliefs, and practices of neonatal intensive care unit healthcare workers regarding nosocomial infections, central venous catheter care, and hand hygiene, Allison M. Kennedy, Alexis M. Elward, and Victoria J. Fraser
Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori, Dangeruta Kersulyte, Awdesh Kalia, MaoJun Zhang, Hae-Kyung Lee, Dharmalingam Subramaniam, Levute Kiuduliene, and Henrika Chalkauskas
Interferon-inducible ubiquitin E2, Ubc8, is a conjugating enzyme for protein ISGylation, Keun Il Kim, Nadia V. Giannakopoulos, Herbert W. Virgin, and Dong-Er Zhang
Capping protein binding to actin in yeast: biochemical mechanism and physiological relevance, Kyoungtae Kim, Atsuko Yamashita, Martin A. Wear, Yuichiro Maéda, and John A. Cooper
Trafficking of plasmepsin II to the food vacuole of the malaria parasite Plasmodium falciparum, Michael Klemba, Wandy Beatty, Ilya Gluzman, and Daniel E. Goldberg
Evaluation of a multiplexed bead assay for assessment of Epstein-Barr virus immunologic status, J. S. Klutts, R. S. Liao, W. M. Dunne Jr., and A. M. Gronowski
Genetic effects on alcohol dependence risk : Re-evaluating the importance of psychiatric and other heritable risk factors, Valerie S. Knopik, Andrew C. Heath, Pamela A F Madden, Kathleen K. Bucholz, Wendy S. Slutske, Elliot C. Nelson, Dixie Statham, John B. Whitfield, and Nicholas G. Martin
Nerve-independent formation of a topologically complex postsynaptic apparatus, Terrance T. Kummer, Thomas Misgeld, Jeff W. Lichtman, and Joshua R. Sanes
Molecular basis of inward rectification: Polyamine interaction sites located by combined channel and ligand mutagenesis, Harley T. Kurata, L. Revell Phillips, Thierry Rose, Gildas Loussouarn, Stefan Herlitze, Hariolf Fritzenschaft, Decha Enkvetchakul, Colin G. Nichols, and Thomas Baukrowitz
Recombinant antigen-based antibody assays for the diagnosis and surveillance of lymphatic filariasis – a multicenter trial, Patrick J. Lammie, Gary Weil, Rahman Noordin, Perumal Kaliraj, Cathy Steel, David Goodman, Vijaya B. Lakshmikanthan, and Eric Ottesen
Potentiation of C1 esterase inhibitor by StcE, a metalloprotease secreted by escherichia coli O157:H7, Wyndham W. Lathem, Tessa Bergsbaken, and Rodney A. Welch
Early growth response gene 1–mediated apoptosis Is essential for transforming growth factor β1–induced pulmonary fibrosis, Chun Geun Lee, Soo Jung Cho, Min Jong Kang, Svetlana P. Chapoval, Patty J. Lee, Paul W. Noble, Teshome Yehualaeshet, Binfeng Lu, Richard A. Flavell, Jeffrey Milbrandt, Robert J. Homer, and Jack A. Elias
The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid A and polymyxin resistance in Salmonella enterica, Hyunwoo Lee, Fong-Fu Hsu, John Turk, and Eduardo A. Groisman
Amyloid-beta peptide induces oligodendrocyte death by activating the neutral sphingomyelinase-ceramide pathway, Jiunn-Tay Lee, Jan Xu, Jin-Moo Lee, Grace Ku, Xianlin Han, Ding-I Yang, Shawei Chen, and Chung Y. Hsu
P Pilus assembly motif necessary for activation of the CpxRA pathway by PapE in Escherichia coli, Yvonne M. Lee, Patricia A. DiGiuseppe, Thomas J. Silhavy, and Scott J. Hultgren
Defining nicotine dependence for genetic research: Evidence from Australian twins, Christina N. Lessov, Nicholas G. Martin, Dixie J. Statham, Alexandre A. Todorov, Wendy S. Slutske, Kathleen K. Bucholz, Andrew C. Heath, and Pamela A F Madden
Antibody responses to Brugia malayi antigens induced by DNA vaccination, Ben-Wen Li, Amy Rush, Shaorong R. Zhang, Kurt C. Curtis, and Gary J. Weil
Active inhibition of plasma cell development in resting B cells by microphthalmia-associated transcription factor, Ling Lin, Andrea J. Gerth, and Stanford L. Peng
Information assessment on predicting protein-protein interactions, Nan Lin, Baolin Wu, Ronald Jansen, Mark Gerstein, and Hongyu Zhao
The C-terminal fragment of the internal 110-kilodalton passenger domain of the Hap protein of nontypeable Haemophilus influenzae is a potential vaccine candidate, Dai-Fang Liu, Kathryn W. Mason, Maria Mastri, Mehran Pazirandeh, David Cutter, Doran L. Fink, Joseph W. St. Geme III, Duzhang Zhu, and Bruce A. Green
Basic helix-loop-helix proteins bind to TrkB and p21(Cip1) promoters linking differentiation and cell cycle arrest in neuroblastoma cells, Yuhui Liu, Mario Encinas, Joan X. Comella, Marti Aldea, and Carme Gallego
MITF links differentiation with cell cycle arrest in melanocytes by transcriptional activation of INK4A, Amy E. Loercher, Elizabeth M.H. Tank, Rachel B. Delston, and J. William Harbour
Differentiation between septic arthritis and transient synovitis of the hip in children with clinical prediction algorithms, Scott J. Luhmann, Angela Jones, Mario Schootman, J. Eric Gordon, Perry L. Schoenecker, and Jan D. Luhmann
Neuropsychological consequences of regular marijuana use: A twin study, M. J. Lyons, J. L. Bar, M. S. Panizzon, R. Toomey, S. Eisen, H. Xian, and M. T. Tsuang
Role for serine protease HtrA (DegP) of streptococcus pyogenes in the biogenesis of virulence factors SpeB and the hemolysin streptolysin S, William R. Lyon and Michael G. Caparon
Evidence for neural effects of repetition that directly correlate with behavioral priming, Luigi Maccotta and Randy L. Buckner
A missense mutation in the γD crystallin gene (CRYGD) associated with autosomal dominant "coral-like" cataract linked to chromosome 2q, Donna S. Mackay, Usha P. Andley, and Alan Shiels
Fosmid-based physical mapping of the Histoplasma capsulatum genome, Vincent Magrini, Wesley C. Warren, John Wallis, William E. Goldman, Jian Xu, Elaine R. Mardis, and John D. McPherson
Cancer pharmacogenetics, S Marsh and H L McLeod
Vav GEFs are required for beta2 integrin-dependent functions of neutrophils, M. Angelica Martinez Gakidis, Xavier Cullere, Timothy Olson, Julie L. Wilsbacher, Bin Zhang, Sheri L. Moores, Klaus Ley, Wojciech Swat, Tanya Mayadas, and Joan S. Brugge
Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures, Karen McGregor, Brian G. Spratt, Awdhesh Kalia, Alicia Bennett, Nicole Bilek, Bernard Beall, and Debra E. Bessen
Novel 180- and 480-base-pair insertions in African and African-American strains of Helicobacter pylori, Shannon L. McNulty, Beth M. Mole, Daiva Dailidiene, Issy Segal, Reid Ally, Rajesh Mistry, Ousman Secka, Richard A. Adegbola, Julian E. Thomas, Erik M. Lenarcic, Richard M. Peek Jr, Douglas E. Berg, and Mark H. Forsyth
Effects of an antibiotic cycling program on antibiotic prescribing practices in an intensive care unit, Liana R. Merz, David K. Warren, Marin H. Kollef, and Victoria J. Fraser
An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression, David N. Messina, Jarret Glasscock, Warren Gish, and Michael Lovett
Structural basis for the restoration of TCR recognition of an MHC allelic variant by peptide secondary anchor substitution, Michael J. Miley, Ilhem Messaoudi, Beatrix M. Metzner, Yudong Wu, Janko Nikolich-Žugich, and Daved H. Fremont
