Submissions from 2003
Eval: A software package for analysis of genome annotations, Evan Keibler and Michael R. Brent
Cluster of type IV secretion genes in Helicobacter pylori's plasticity zone, Dangeruta Kersulyte, Billie Velapatiño, Asish K. Mukhopadhyay, Lizbeth Cahuayme, Alejandro Bussalleu, Juan Combe, Robert H. Gilman, and Douglas E. Berg
Mesangial cells organize the glomerular capillaries by adhering to the G domain of laminin alpha5 in the glomerular basement membrane, Yamato Kikkawa, Ismo Virtanen, and Jeffrey H. Miner
Specificity and regulation of DNA binding by the yeast glucose transporter gene repressor Rgt1, Jeong-Ho Kim, Jeffrey Polish, and Mark Johnston
RSEARCH: Finding homologs of single structured RNA sequences, Robert J. Klein and Sean R. Eddy
Toll-like receptor-dependent production of IL-12p40 causes chronic enterocolitis in myeloid cell-specific Stat3-deficient mice, Masaya Kobayashi, Mi-Na Kweon, Hirotaka Kuwata, Robert D. Schreiber, Hiroshi Kiyono, Kiyoshi Takeda, and Shizuo Akira
Interferon-producing cells fail to induce proliferation of naive T cells but can promote expansion and T helper 1 differentiation of antigen-experienced unpolarized T cells, Anne Krug, Ravi Veeraswamy, Andrew Pekosz, Osami Kanagawa, Emil R. Unanue, Marco Colonna, and Marina Cella
Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae, Joseph Landry, Ann Sutton, Tina Hesman, Jinrong Min, Rui-Ming Xu, Mark Johnston, and Rolf Sternglanz
Antiadhesive role of apical decay-accelerating factor (CD55) in human neutrophil transmigration across mucosal epithelia, Donald W. Lawrence, Walter J. Bruyninckx, Nancy A. Louis, Douglas M. Lublin, Gregory L. Stahl, Charles A. Parkos, and Sean P. Colgan
The role of the lissencephaly protein Pac1 during nuclear migration in budding yeast, Wei-Lih Lee, Jessica R. Oberle, and John A. Cooper
A high performance test of differential gene expression for oligonucleotide arrays, William J. Lemon, Sandya Liyanarachchi, and Ming You
Predominance of Ehrlichia ewingii in Missouri dogs, Allison M. Liddell, Steven L. Stockham, Michael A. Scott, John W. Summer, Christopher D. Paddock, Monique Gaudreault-Keener, Max Q. Arens, and Gregory A. Storch
Denaturing high-performance liquid chromatography for detecting and typing genital Human Papillomavirus, Jianduan Li, Daniela S. Gerhard, Zhengyan Zhang, Phillis C. Huettner, Jason Wright, Loan Nguyen, Danielle Lu, and Janet S. Rader
Reduction of a dislocation of the hip due to developmental dysplasia: Implications for the need for future surgery, Scott J. Luhmann, George S. Bassett, J. Eric Gordon, Mario Schootman, and Perry L. Schoenecker
Multimeric threading-based prediction of protein–protein interactions on a genomic scale: Application to the Saccharomyces cerevisiae proteome, Long Lu, Adrian K. Arakaki, Hui Lu, and Jeffrey Skolnick
Trigger factor-mediated prolyl isomerization influences maturation of the Streptococcus pyogenes cysteine protease, William R. Lyon and Michael G. Caparon
Galactokinase gene mutations and age-related cataract. Lack of association in an Italian population, Giovanni Maraini, J. Fielding Hejtmancik, Alan Shiels, Donna S. Mackay, Raffaella Aldigeri, Xiao D. Jiao, Sally L. Williams, Robert D. Sperduto, and George Reed
Novel p27(kip1) C-terminal scatter domain mediates Rac-dependent cell migration independent of cell cycle arrest functions, Sandra S. McAllister, Michelle Becker-Hapak, Giuseppe Pintucci, Michele Pagano, and Steven F. Dowdy
Analysis and functional classification of transcripts from the nematode Meloidogyne incognita, James P. McCarter, Makedonka Dautova Mitreva, John Martin, Mike Dante, Todd Wylie, Uma Rao, Deana Pape, Yvette Bowers, Brenda Theising, Claire V. Murphy, Andrew P. Kloek, Brandi J. Chiapelli, Sandra W. Clifton, David McK Bird, and Robert H. Waterston
Immune-deficient mouse models for analysis of human stem cells, Todd E. Meyerrose, Phillip Herrbrich, David A. Hess, and Jan A. Nolta
Efficient high-throughput resequencing of genomic DNA, Raymond D. Miller, Shenghui Duan, Elizabeth G. Lovins, Ellen F. Kloss, and Pui-Yan Kwok
Targeted chemical disruption of clathrin function in living cells, Howard S. Moskowitz, John Heuser, Timothy E. McGraw, and Timothy A. Ryan
Effect of Achilles tendon lengthening on neuropathic plantar ulcers: A randomized clinical trial, Michael J. Mueller, David R. Sinacore, Mary Kent Hastings, Michael J. Strube, and Jeffrey E. Johnson
The fdxA ferredoxin gene can down-regulate frxA nitroreductase gene expression and is essential in many strains of Helicobacter pylori, Asish K. Mukhopadhyay, Jin-Yong Jeong, Daiva Dailidiene, Paul S. Hoffman, and Douglas E. Berg
Accelerated fat absorption in intestinal alkaline phosphatase knockout mice, Sonoko Narisawa, Lei Huang, Arata Iwasaki, Hideaki Hasegawa, David H. Alpers, and Jose Luis Millan
Role of RopB in growth phase expression of the SpeB cysteine protease of Streptococcus pyogenes, Melody N. Neely, William R. Lyon, Donna L. Runft, and Michael Caparon
Human intestinal epithelial and smooth muscle cells are potent producers of IL-6, Edmond K. Ng, Ninder Panesar, Walter E. Longo, Marc J. Shapiro, Donald L. Kaminski, Kym C. Tolman, and John E. Mazuski
Lens connexins α3Cx46 and α8Cx50 interact with zonula occludens protein-1 (ZO-1), Peter A. Nielsen, Amos Baruch, Valery I. Shestopalov, Ben N.G. Giepmans, Irene Dunia, E. Lucio Benedetti, and Nalin M. Kumar
The IκB function of NF-κB2 p100 controls stimulated osteoclastogenesis, Deborah Veis Novack, Li Yin, Amanda Hagen-Stapleton, Robert D. Schreiber, David V. Goeddel, F. Patrick Ross, and Steven L. Teitelbaum
Inhibition of stress-inducible kinase pathways by tumorigenic mutant p53, Yoichi Ohiro, Anny Usheva, Shinichiro Kobayashi, Shannon L. Duffy, Regan Nantz, David Gius, and Nobuo Horikoshi
Invasive disease due to nontypeable Haemophilus influenzae among children in Arkansas, Joshua M. O'Neill, Joseph W. St. Geme III, David Cutter, Elisabeth E. Adderson, Juliana Anyanwu, Richard F. Jacobs, and Gordon E. Schutze
Antifungal susceptibility survey of 2,000 bloodstream Candida isolates in the United States, Luis Ostrosky-Zeichner, John H. Rex, Peter G. Pappas, Richard J. Hamill, Robert A. Larsen, Harold W. Horowitz, William G. Powderly, Newton Hyslop, Carol A. Kauffman, John Cleary, Julie E. Mangino, and Jeannette Lee
Three-dimensional organization of basal bodies from wild-type and δ-tubulin deletion strains of Chlamydomonas reinhardtii, Eileen T. O'Toole, Thomas H. Giddings, J. Richard McIntosh, and Susan K. Dutcher
Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database, Deana Pape, John Martin, Todd Wylie, Mike Dante, Robert H. Waterston, Sandra W. Clifton, and et al
Ligand-induced closure of inward rectifier Kir6.2 channels traps spermine in the pore, L. Revell Phillips and Colin G. Nichols
DNA-level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh, Motiur Rahman, Asish K. Mukhopadhyay, Shamsun Nahar, Simanti Datta, Milan Mashhud Ahmad, Safique Sarker, Ibna M. Masud, Lars Engstrand, M. John Albert, G. Balakrish Nair, and Douglas E. Berg
Involvement of fatty acid pathways and cortical interaction of the pronuclear complex in Caenorhabditis elegans embryonic polarity, Chad A. Rappleye, Akiko Tagawa, Nathalie Le Bot, Julie Ahringer, and Raffi V. Aroian
Thoracoscopic intradiscal spine fusion using a minimally invasive gene-therapy technique, K. Daniel Riew, Jueren Lou, Neill M. Wright, Su-Li Cheng, Kyongtae T. Bae, and Louis V. Avioli
Prevalence and distribution of adhesins in invasive non-type b encapsulated Haemophilus influenzae, Carina A. Rodriguez, Vasanthi Avadhanula, Amy Buscher, Arnold L. Smith, Joseph W. St. Geme III, and Elisabeth E. Adderson
Retarded outer segment development in TrkB knockout mouse retina organ culture, Baerbel Rohrer and Judith Mosinger Ogilvie
Genetic analysis of maximum cigarette-use phenotypes, Nancy L. Saccone, Rosalind J. Neuman, Scott F. Saccone, and John P. Rice
CD14- and toll-like receptor-dependent activation of bladder epithelial cells by lipopolysaccharide and type 1 piliated Escherichia coli, Joel D. Schilling, Steven M. Martin, David A. Hunstad, Kunal P. Patel, Matthew A. Mulvey, Sheryl S. Justice, Robin G. Lorenz, and Scott J. Hultgren
Human heterochromatin protein 1 isoforms HP1(Hsα) and HP1(Hsβ) interfere with hTERT-telomere interactions and correlate with changes in cell growth and response to ionizing radiation, Girdhar G. Sharma, Kyu-kye Hwang, Raj K. Pandita, Arun Gupta, Sonu Dhar, Julie Parenteau, Manjula Agarwal, Howard J. Worman, Raymund J. Wellinger, and Tej K. Pandita
The genome sequence of caenorhabditis briggsae: a platform for comparative genomics, Lincoln D. Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R. Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'Eustachio, David H. Fitch, Lucinda A. Fulton, Robert E. Fulton, Sam Griffiths-Jones, Todd W. Harris, LaDeana W. Hillier, Ravi Kamath, Patricia E. Kuwabara, Elaine R. Mardis, Marco A. Marra, Tracie L. Miner, Patrick Minx, James C. Mullikin, Robert W. Plumb, Jane Rogers, Jacqueline E. Schein, Marc Sohrmann, John Spieth, Jason E. Stajich, Chaochun Wei, David Willey, Richard Wislon, Richard Durbin, and Robert H. Waterson
Quantitative evaluation of inflammatory and immune responses in the early stages of chronic Helicobacter pylori infection, Reinhard K. Straubinger, Andrea Greiter, Sean P. McDonough, Alexander Gerold, Eugenio Scanziani, Sabina Soldati, Daiva Dailidiene, Giedrius Dailide, Douglas E. Berg, and Kenneth W. Simpson
Adhesive and lateral E-cadherin dimers are mediated by the same interface, Regina B. Troyanovsky, Eugene Sokolov, and Sergey M. Troyanovsky
Modulation of Rab5 and Rab7 recruitment to phagosomes by phosphatidylinositol 3-kinase, Otilia V. Vieira, Cecilia Bucci, Rene E. Harrison, William S. Trimble, Letizia Lanzetti, Jean Gruenberg, Alan Schreiber, Philip D. Stahl, and Sergio Gernstein
Viral discovery and sequence recovery using dna microarrays, David Wang, Anatoly Urisman, Yu-Tsueng Liu, Michael Springer, Thomas G. Ksiazek, Dean D. Erdman, Elaine R. Mardis, Matthew Hickenbotham, Vincent Magrini, James Eldred, J P. Latreille, Richard K. Wilson, Don Ganem, and Joseph L. DeRisi
The epidemiology of vancomycin-resistant Enterococcus colonization in a medical intensive care unit, David K. Warren, Marin H. Kollef, Sondra M. Seiler, Scott K. Fridkin, and Victoria J. Fraser
Actin filament polymerization regulates gliding motility by apicomplexan parasites, D. M. Wetzel, S. Håkansson, K. Hu, D. Roos, and L. D. Sibley
Role of nonhost environments in the lifestyles of Salmonella and Escherichia coli, Mollie D. Winfield and Eduardo A. Groisman
Kinetic FP-TDI assay for SNP allele frequency determination, Ming Xiao, Sherif Medhat Latif, and Pui-Yan Kwok
Inactivation of BK channels by the NH2 terminus of the beta2 auxiliary subunit: An essential role of a terminal peptide segment of three hydrophobic residues, Xiao-Ming Xia, J. P. Ding, and Christopher J. Lingle
A comprehensive analysis of the expression of crystallins in mouse retina, Jinghua Xi, Rafal Farjo, Shigeo Yoshida, Timothy S. Kern, Anand Swaroop, and Usha P. Andley
A novel domain within the DEAD-box protein DP103 is essential for transcriptional repression and helicase activity, Xiaomei Yan, Jean-Francois Mouillet, Qinglin Ou, and Yoel Sadovsky
Tumor necrosis factor alpha is a key mediator of gut inflammation seen in amebic colitis in human intestine in the SCID mouse-human intestinal xenograft model of disease, Zhi Zhang, Sajan Mahajan, Xiaochung Zhang, and Samuel L. Stanley Jr.
What's new in spine surgery, Jack E. Zigler, Paul A. Anderson, Scott D. Boden, Keith H. Bridwell, and Alexander R. Vaccaro
Submissions from 2002
Dipeptidyl peptidase I activates neutrophil-derived serine proteases and regulates the development of acute experimental arthritis, April M. Adkinson, Sofia Z. Raptis, Diane G. Kelley, and Christine T.N. Pham
Astrocyte-specific inactivation of the neurofibromatosis 1 gene (NF1) is insufficient for astrocytoma formation, Michaela Livia Bajenaru, Yuan Zhu, Nicole M. Hedrick, Jessica Donahoe, Luis F. Parada, and David H. Gutmann
Convergence of TOR-nitrogen and Snf1-glucose signaling pathways onto Gln3, Paula G. Bertram, Jae H. Choi, John Carvalho, Ting-Fung Chan, Wandong Ai, and X. F. Steven Zheng
Clinical decision making based on data from GDx: One year observations, James C. Bobrow
Flexor tendon repair and rehabilitation: State of the art in 2002, Martin I. Boyer, James W. Strickland, Drew R. Engles, Kavi Sachar, and Fraser J. Leversedge
The spectrum of complications of immunosuppression: Is the time right for hand transplantation?, Michael J. Brenner, Thomas H. Tung, John N. Jensen, and Susan E. Mackinnon
Cyclosporin A inhibits caspase-independent death of NGF-deprived sympathetic neurons: a potential role for mitochondrial permeability transition., Louis K. Chang and Eugene M. Johnson
Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks, Barak A. Cohen, Yitzhak Pilpel, Robi D. Mitra, and George M. Church
Neural systems for visual orienting and their relationships to spatial working memory, Maurizio Corbetta, J. Michelle Kincade, and Gordon Shulman
Structural and functional determinants of conserved lipid interaction domains of inward rectifying Kir6.2 channels, Catherine A. Cukras, Iana Jeliazkova, and Colin G. Nichols
The role of NH2-terminal positive charges in the activity of inward rectifier KATP channels, Catherine A. Cukras, Iana Jeliazkova, and Colin G. Nichols
Bacterial infectious disease control by vaccine development, Roy Curtiss III
The challenge of target sequence specificity in C→U RNA editing, Nicholas O. Davidson
Surgical correction of the snapping iliopsoas tendon in adolescents, Matthew B. Dobbs, J. Eric Gordon, Scott J. Luhmann, Deborah A. Szymanski, and Perry L. Schoenecker
Prevalance of neural axis abnormalities in patients with infantile idiopathic scoliosis, Matthew B. Dobbs, Lawrence G. Lenke, Deborah A. Szymanski, Jose A. Morcuende, Stuart L. Weinstein, Keith H. Bridwell, and Paul D. Sponseller
Bacterial adhesion: Seen any good biofilms lately?, W. Michael Dunne Jr.
ε-tubulin Is an essential component of the centriole, Susan K. Dutcher, Naomi S. Morrissette, Andrea M. Preble, Craig Rackley, and John Stanga
T helper subset development: roles of instruction, selection, and transcription, J. David Farrar, Helene Asnagli, and Kenneth M. Murphy
The cardiac phenotype induced by PPARα overexpression mimics that caused by diabetes mellitus, Brian N. Finck, John J. Lehman, Teresa C. Leone, Michael J. Welch, Michael J. Bennett, Attila Kovacs, Xianlin Han, Richard W. Gross, Ray Kozak, Gary D. Lopaschuk, and Daniel P. Kelly
The Haemophilus influenzae Hap autotransporter binds to fibronectin, laminin, and collagen IV, Doran L. Fink, Bruce A. Green, and Joseph W. St. Geme III
Myeloperoxidase produces nitrating oxidants in vivo, Joseph P. Gaut, Jaeman Byun, Hung D. Tran, Wendy M. Lauber, James A. Carroll, Richard S. Hotchkiss, Abderrazzaq Belaaouaj, and Jay W. Heinecke
Alkaline phosphatase reporter transposon for identification of genes encoding secreted proteins in gram-positive microorganisms, Carmela M. Gibson and Michael G. Caparon
Expression, autoregulation, and DNA binding properties of the Mycobacterium tuberculosis TrcR response regulator, Shelley E. Haydel, William H. Benjamin Jr., Nancy E. Dunlap, and Josephine E. Clark-Curtiss
Heparin cofactor II inhibits arterial thrombosis after endothelial injury, Li He, Cristina P. Vicente, Randal J. Westrick, Daniel T. Eitzman, and Douglas M. Tollefsen
Immune responses to recombinant pneumococcal PspA antigen delivered by live attenuated Salmonella enterica serovar typhimurium vaccine, Ho Young Kang, Jay Srinivasan, and Roy Curtiss III
Transposable element ISHp608 of Helicobacter pylori: Nonrandom geographic distribution, functional organization, and insertion specificity, Dangeruta Kersulyte, Billie Velapatiño, Giedrius Dailide, Asish K. Mukhopadhyay, Yoshiyuki Ito, Lizbeth Cahuayme, Alan J. Parkinson, Robert H. Gilman, and Douglas E. Berg
Dynamic interplay between adhesive and lateral E-cadherin dimers, Jorg Klingelhofer, Oscar Y. Laur, Regina B. Troyanovsky, and Sergey M. Troyanovsky
Spotted substrates for focal presentation of proteins to cells, Terrance Kummer, Hiroshi Nishimune, Rachel Wong, and Joshua Sanes
Overlapping and enzyme-specific contributions of matrix metalloproteinases-9 and -12 in IL-13-induced inflammation and remodeling, Sophie Lanone, Tao Zheng, Zhou Zhu, Wei Liu, Chun Geun Lee, Bing Ma, Qingsheng Chen, Robert J. Homer, Jingming Wang, Lesley A. Rabach, Morgan E. Rabach, J. Michael Shipley, Steven D. Shapiro, Robert M. Senior, and Jack A. Elias
CD46 is phosphorylated at tyrosine 354 upon infection of epithelial cells by Neisseria gonorrhoeae, Shaun W. Lee, Robert A. Bonnah, Dustin L. Higashi, John P. Atkinson, Sharon L. Milgram, and Magdalene So
Setting the stage for molecular dissection of the regulatory components of BK channels, Christopher J. Lingle
1,25-Dihydroxyvitamin D3 is a negative endocrine regulator of the renin-angiotensin system, Yan Chun Li, Juan Kong, Minjie Wei, Zhou-Feng Chen, Shu Q. Liu, and Li-Ping Cao
Proteasome regulates the delivery of LDL receptor-related protein into the degradation pathway, Lora Melman, Hans J. Geuze, Yonghe Li, Lynn M. McCormick, Peter van Kerkhof, Ger J. Strous, Alan L. Schwartz, and Guojun Bu
Transcriptional induction of slit diaphragm genes by Lmx1b is required in podocyte differentiation, Jeffrey H. Miner, Roy Morello, Kaya L. Andrews, Cong Li, Corinne Antignac, Andrey S. Shaw, and Brendan Lee
Regulation of lutropin circulatory half-life by the mannose/N-acetylgalactosamine-4-SO4 receptor is critical for implantation in vivo, Yiling Mi, Steven D. Shapiro, and Jacques U. Baenziger
Cytoskeleton of Apicomplexan parasites, Naomi S. Morrissette and L. David Sibley
Thrombin-activatable fibrinolysis inhibitor (TAFI) deficiency is compatible with murine life, Mariko Nagashima, Zheng-Feng Yin, Lei Zhao, Kathy White, Yanhong Zhu, Meredith Halks-Miller, George J. Broze Jr., William P. Fay, and John Morser
Kinase suppressor of Ras (KSR) Is a scaffold which facilitates mitogen-activated protein kinase activation in vivo, AnhCo Nguyen, W. Richard Burack, Jeffrey L. Stock, Robert Kortum, Oleg V. Chaika, Maryam Afkarian, William J. Muller, Kenneth M. Murphy, Deborah K. Morrison, Robert E. Lewis, John McNeish, and Andrey S. Shaw
Intrinsic and extrinsic pathway signaling during neuronal apoptosis: Lessons from the analysis of mutant mice, Girish V. Putcha, Charles A. Harris, Krista L. Moulder, Rachael M. Easton, Craig B. Thompson, and Eugene M. Johnson
Structural changes in the forefoot of individuals with diabetes and a prior plantar ulcer, Douglas D. Robertson, Michael J. Mueller, Kirk E. Smith, Paul K. Commean, Thomas Pilgrim, and Jeffrey E. Johnson
Effect of trimethoprim-sulfamethoxazole on recurrent bacteriuria and bacterial persistence in mice infected with uropathogenic Escherichia coli, Joel D. Schilling, Robin G. Lorenz, and Scott J. Hultgren
What's new in orthopaedic research, Matthew J. Silva and Linda J. Sandell
Restrictions limiting the generation of DNA double strand breaks during chromosomal V(D)J recombination, Robert E. Tillman, Andrea L. Wooley, Maureen M. Hughes, Tara D. Wehrly, Wojciech Swat, and Barry P. Sleckman
