The Open Access Publications collection contains peer-reviewed articles authored by Washington University School of Medicine faculty that have been published in open access journals or authorized by the publishers for open access availability. Open access works are generally defined as being publicly available online and free of most licensing and copyright restrictions. The Bernard Becker Medical Library maintains this collection in support of Washington University’s commitment to the principles of open access publishing and making the scholarly work and research results of our faculty as widely and easily available as possible.

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Submissions from 2007

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ABIN-3: A molecular basis for species divergence in interleukin-10-induced anti-inflammatory actions, Brian K. Weaver, Erwin Bohn, Barbi A. Judd, M. Pilar Gil, and Robert D. Schreiber

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Analysis of surgical smoke produced by various energy-based instruments and effect on laparoscopic visibility, Kyle J. Weld, Stephen Dryer, Caroline D. Ames, Kuk Cho, Chris Hogan, Myonghwa Lee, Pratim Biswas, and Jaime Landman

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Algebraic correction methods for computational assessment of clone overlaps in DNA fingerprint mapping, Michael C. Wendl

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Screen for genetic modifiers of stbm reveals that photoreceptor fate and rotation can be genetically uncoupled in the Drosophila eye, Tanya Wolff, Jake B. Guinto, and Amy S. Rawls

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Symposium integrating evidence-based medicine into clinical practice, Rick W. Wright, John E. Kuhn, Annunziato Amendola, Morgan H. Jones, and Kurt P. Spindler

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DFsn collaborates with Highwire to down-regulate the Wallenda/DLK kinase and restrain synaptic terminal growth, Chunlai Wu, Richard W. Daniels, and Aaron DiAntonio

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Inflammatory arthritis can be reined in by CpG-induced DC–NK cell cross talk, Hsin-Jung Wu, Heloisa Sawaya, Bryce Binstadt, Margot Brickelmaier, Amanda Blasius, Leonid Gorelik, Umar Mahmood, Ralph Weissleder, John Carulli, Christophe Benoist, and Diane Mathis

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An investigation of the effects of lipid-lowering medications: Genome-wide linkage analysis of lipids in the HyperGEN study, Jun Wu, Michael A. Province, Hilary Coon, Steven C. Hunt, John H. Eckfeldt, Donna K. Arnett, Gerardo Heiss, Cora E. Lewis, R Curtis Ellison, Dabeeru C. Rao, Treva Rice, and Aldi T. Kraja

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Neoplasia driven by mutant c-KIT Is mediated by intracellular, not plasma membrane, receptor signaling, Zhifu Xiang, Frederike Kreisel, Jennifer Cain, AnnaLynn Colson, and Michael H. Tomasson

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Genetic and environmental contributions to pathological gambling symptoms in a 10-year follow-up, Hong Xian, Jeffrey F. Scherrer, Wendy S. Slutske, Kamini R. Shah, Rachel Volberg, and Seth A. Eisen

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Evolution of symbiotic bacteria in the distal human intestine, Jian Xu, Michael A. Mahowald, Ruth E. Lay, Catherine A. Lozupone, Micah Hamady, Eric C. Martens, Bernard Henrissat, Pedro M. Coutinho, Patrick Minx, Philippe Latreille, Holland Cordum, Andrew Van Brunt, Kyung Kim, Robert S. Fulton, Lucinda A. Fulton, Sandra W. Clifton, Richard K. Wilson, Robin D. Knight, and Jeffrey I. Gordon

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LAT and NTAL mediate immunoglobulin E-induced sustained extracellular signal-regulated kinase activation critical for mast cell survival, Sho Yamasaki, Eri Ishikawa, Machie Sakuma, Osami Kanagawa, Alec M. Cheng, Bernard Malissen, and Takashi Saito

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Mutations in gfpt1 and skiv2l2 cause distinct stage-specific defects in larval melanocyte regeneration in zebrafish, Chao-Tsung Yang, Anna E. Hindes, Keith A. Hultman, and Stephen L. Johnson

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Shotgun lipidomics identifies a paired rule for the presence of isomeric ether phospholipid molecular species, Kui Yang, Zhongdan Zhao, Richard W. Gross, and Xianlin Han

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Suppression of keratoepithelin and myocilin by small interfering RNAs (siRNA) in vitro, Ching Yuan, Emily J. Zins, Abbott F. Clark, and Andrew J.W. Huang

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Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach, Guoyan Zhao, Kuan Y. Chang, Katherine Varley, and Gary D. Stormo

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Identification of muscle-specific regulatory modules in Caenorhabditis elegans, Guoyan Zhao, Lawrence A. Schriefer, and Gary D. Stormo

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Coronavirus replication does not require the autophagy gene ATG5, Zijiang Zhao, Larissa B. Thackray, Brian C. Miller, Teresa M. Lynn, Michelle M. Becker, Eric Ward, Noboru N. Mizushima, Mark R. Denison, and Herbert W. Virgin

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Characterization and identification of microRNA core promoters in four model species, Xuefeng Zhou, Jianhua Ruan, Guandong Wang, and Weixiong Zhang

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UV-B responsive microRNA genes in Arabidopsis thaliana, Xuefeng Zhou, Guandong Wang, and Weixiong Zhang

Submissions from 2006

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Contrasting models of genetic co-morbidity for cannabis and other illicit drugs in adult Australian twins, A. Agrawal, M. T. Lynskey, K. K. Bucholz, N. G. Martin, P. A F Madden, and A. C. Heath

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The latent class structure of ADHD is stable across informants, Robert R. Althoff, William E. Copeland, Catherine Stanger, Eske M. Derks, Richard D. Todd, Rosalind J. Neuman, Toos C.E.M. Van Beijsterveldt, Dorret I. Boomsma, and James J. Hudziak

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Alteration in irrigant flow and deflection of flexible ureteroscopes with Nitinol baskets, Caroline D. Ames, Juan M. Perrone, Kyle J. Weld, Kelley V. Foyil, Yan Yan, Ramakrishna Venkatesh, and Jaime Landman

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Pharmacologic manipulation of the porcine ureter: Acute impact of topical drugs on ureteral diameter and peristaltic activity, Caroline D. Ames, Kyle J. Weld, Stephen T. Dryer, Greg Hruby, Scott D. Minor, Yan Yan, Robert S. Figenshau, Sam Bhayani, Jaime Landman, and Ramakrishna Venkatesh

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Evaluation of laparoscopic performance with alteration in angle of vision, Caroline Ames, Alison J. Frisella, Yan Yan, Peter Shulam, and Jaime Landman

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Cisplatin chemotherapy (without erythropoietin) and risk of life-threatening thromboembolic events in carcinoma of the uterine cervix: the tip of the iceberg? A review of the literature, Jon C. Anders, Perry W. Grigsby, and Anurag K. Singh

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GDNF rescues hyperglycemia-induced diabetic enteric neuropathy through activation of the PI3K/Akt pathway, Mallappa Anitha, Chetan Gondha, Roy Sutliff, Alexander Parsadanian, Simon Mwangi, Shanthi V. Sitaraman, and Shanthi Srinvasan

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Inappropriate antibiotic use in a tertiary care center in thailand: An incidence study and review of experience in Thailand, Anucha Apisarnthanarak, Somwang Danchaivijitr, Thomas C. Bailey, and Victoria J. Fraser

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Macrophages inhibit neovascularization in a murine model of age-related macular degeneration, Rajendra S. Apte, Jennifer Richter, John Herndon, and Thomas A. Ferguson

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C5a and Fcγ receptors: A mutual admiration society, John P. Atkinson

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Bypassing complement: Evolutionary lessons and future implications, John P. Atkinson and Michael M. Frank

Chronic colonization with Pandoraea apista in cystic fibrosis patients determined by repetitive-element-sequence PCR, R. M. Atkinson, J. J. LiPuma, D. B. Rosenbluth, and W. M. Dunne Jr.

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YtxR, a conserved LysR-like regulator that induces expression of genes encoding a putative ADP-ribosyltransferase toxin homologue in Yersinia enterocolitica, Grace L. Axler-DiPerte, Virginia L. Miller, and Andrew J. Darwin

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Is influenza an influenza-like illness? Clinical presentation of influenza in hospitalized patients, Hilary M. Babcock, Liana R. Merz, and Victoria J. Fraser

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Fast cloning inverted repeats for RNA interference, Sujin Bao and Ross L. Cagan

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Direct observation of a preinactivated, open state in BK channels with β2 subunits, G. Richard Benzinger, Xiao-Ming Xia, and Christopher J. Lingle

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Recent advances in basic neurosciences and brain disease: From synapses to behavior, Guo-Qiang Bi, Vadim Bolshakov, Guojun Bu, Catherine M. Cahill, Zhou-Feng Chen, Graham L. Collingridge, Robin L. Cooper, Jens R. Coorssen, Alaa El-Husseini, Vasco Galhardo, Web-Biao Gan, Jianguo Gu, Kazuhide Inoue, John Isaac, Koichi Iwata, Zhengping Jia, Bong-Kiun Kaang, Mikito Kawamata, Satoshi Kida, Eric Klann, Tatsuro Kohno, Min Li, Xiao-Jiang Li, John F. MacDonald, Karim Nader, Peter V. Nguyen, Uhtaek Oh, Ke Ren, John C. Roder, Michael W. Salter, Weihong Song, Shuzo Sugita, Shao-Jun Tang, Yuanxiang Tao, Yu Tian Wang, Newton Woo, Melanie A. Woodin, Zhen Yan, Megumu Yoshimura, Ming Xu, Zao C. Xu, Xia Zhang, Mei Zhen, and Min Zhuo

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Dysregulation of Reg gene expression occurs early in gastrointestinal tumorigenesis and regulates anti-apoptotic genes, Kumar S. Bishnupuri, Qizhi Luo, Joshua R. Korzenik, Jeffrey O. Henderson, Courtney W. Houchen, Shrikant Anant, and Brian K. Dieckgraefe

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Effect of exercise training on in vitro LDL oxidation and free radical-induced hemolysis: The HERITAGE family study, Denis Blache, Suzanne Lussier-Cacan, Jacques Gagnon, Arthur S. Leon, D.C. Rao, James S. Skinner, Jack H. Wilmore, Tuomo Rankinen, Claude Bouchard, and Jean Davignon

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Long-term memory deficits in Pavlovian fear conditioning in Ca2+/calmodulin kinase kinase α-deficient mice, Frank Blaeser, Matthew J. Sanders, Nga Truong, Shanelle Ko, Long Jun Wu, David F. Wozniak, Michael S. Fanselow, Min Zhuo, and Talal A. Chatila

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Pancreatic regenerating protein (regⅠ) and regⅠreceptor mRNA are upregulated in rat pancreas after induction of acute pancreatitis, Martin H. Bluth, Sameer A. Patel, Brian K. Dieckgraefe, Hiroshi Okamoto, and Michael E. Zenilman

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A critical role for eukaryotic elongation factor 1A-1 in lipotoxic cell death, Nica M. Borradaile, Kimberly K. Buhman, Laura L. Listenberger, Carolyn J. Magee, Emiko T.A. Morimoto, Daniel S. Ory, and Jean E. Schaffer

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Correlates of physical activity for adults with disability, Sarah E. Boslaugh and Elena M. Andresen

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Effective control of chronic c-herpesvirus infection by unconventional MHC class Ia–independent CD8 T cells, Douglas C. Braaten, James Scott McClellan, Ilhem Messaoudi, Scott A. Tibbetts, Kelly B. McClellan, Janko Nikolich-Zugich, and Herber W. Virgin IV

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What's new in spine surgery, Keith H. Bridwell, Paul A. Anderson, Scott D. Boden, Alexander R. Vaccaro, and Jeffrey C. Wang

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Symposium: Subspecialty certification: Current status of orthopaedic subspecialty certification, Keith H. Bridwell, Christopher D. Harner, David W. Polly Jr., and Peter J. Stern

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Genetic architecture of smoking behavior: A study of Finnish adult twins, Ulla Broms, Karri Silventoinen, Pamela A.F. Madden, Andrew C. Heath, and Jaakko Kaprio

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A glucose sensor in Candida albicans, Victoria Brown, Jessica A. Sexton, and Mark Johnston

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Zoom in on neurodegeneration, Guojun Bu, Huaxi Xu, and Todd E. Golde

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Use of an Ilizarov apparatus to perform closed reduction of a chronic proximal dislocation following total hip arthroplasty: A case report, R. Allen Butler, Joseph R. Hsu, and Robert L. Barrack

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Modulation of β-amyloid precursor protein trafficking and processing by the low density lipoprotein receptor family, Judy A. Cam and Guojun Bu

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Does HIV cause cardiovascular disease?, Andrew Carr and Daniel Ory

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A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles, Li-Wei Chang, Rakesh Nagarajan, Jeffrey A. Magee, Jeffrey Milbrandt, and Gary D. Stormo

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Transcriptional regulation of metabotropic glutamate receptor 2/3 expression by the NF-κB pathway in primary dorsal root ganglia neurons: A possible mechanism for the analgesic effect of L-acetylcarnitine, Santina Chiechio, Agata Copani, Laura De Petris, Maria Elena P. Morales, Ferdinando Nicoletti, and Robert W. Gereau IV

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Characterization of multimeric complexes formed by the human PTB1 protein on RNA, Caroline Clerte and Kathleen B. Hall

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Toll-like receptors and IFN-α: Partners in autoimmunity, Marco Colonna

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Trimeric autotransporters require trimerization of the passenger domain for stability and adhesive activity, Shane E. Cotter, Neeraj K. Surana, Susan Grass, and Joseph W. St. Geme III

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Mechanisms of sympathoadrenal failure and hypoglycemia in diabetes, Philip E. Cryer

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Contraselectable streptomycin susceptibility determinant for genetic manipulation and analysis of Helicobacter pylori, Daiva Dailidiene, Giedrius Dailide, Dangeruta Kersulyte, and Douglas E. Berg

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Adaptively inferring human transcriptional subnetworks, Debopriya Das, Zaher Nahlé, and Michael Q. Zhang

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VPg of murine norovirus binds translation initiation factors in infected cells, Katie F. Daughenbaugh, Christiane E. Wobus, and Michele E. Hardy

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Maintenance of warfarin anticoagulation for patients undergoing vitreoretinal surgery, Pouya N. Dayani and M. Gilbert Grand

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New role for hPar-1 kinases EMK and C-TAK1 in regulating localization and activity of class IIa histone deacetylases, Franck Dequiedt, Maud Martin, Julia Von Blume, Didier Vertommen, Emily Lecomte, Nathalie Mari, Marie-France Heinen, Malte Bachmann, Jean-Claude Twizere, Mei Chris Huang, Mark H. Rider, Helen Piwnica-Worms, Thomas Seufferlein, and Richard Kettmann

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The type and frequency of fetal renal disorders and management of renal pelvis dilatation, Jeffrey M. Dicke, Valerie M. Blanco, Yan Yan, and Douglas E. Coplen

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Long-term follow-up of patients with clubfeet treated with extensive soft-tissue release, Matthew B. Dobbs, Ryan Nunley, and Perry L. Schoenecker

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Early results of a new method of treatment for idiopathic congenital vertical talus, Matthew B. Dobbs, Derek B. Purcell, Ryan Nunley, and Jose A. Morcuende

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GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions, Jason M. Doherty, Lynn K. Carmichael, and Jason C. Mills

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Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints, Robin D. Dowell and Sean R. Eddy

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Relationships between upper-limb functional limitation and self-reported disability 3 months after stroke, Alexander W. Dromerick, Catherine E. Lang, Rebecca Birkenmeier, Michele G. Hahn, Shirley A. Sahrmann, and Dorothy F. Edwards

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H-NS represses inv transcription in Yersinia enterocolitica through competition with RovA and interaction with YmoA, Damon W. Ellison and Virginia L. Miller

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Outbreak of Salmonella javiana infection at a children's hospital, Alexis Elward, Autumn Grim, Patricia Schroeder, Patricia Kieffer, Patricia Sellenriek, Rhonda Ferrett, Hilda Chaski Adams, Virginia Phillips, Rhonda Bartow, Debra Mays, Steven Lawrence, Patrick Seed, Galit Holzmann-Pazgal, Louis Polish, Terry Leet, and Victoria Fraser

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Risk factors for nosocomial primary bloodstream infection in pediatric intensive care unit patients: A 2-year prospective cohort study, Alexis M. Elward and Victoria J. Fraser

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Surfactant protein D increases fusion of Mycobacterium tuberculosis- containing phagosomes with lysosomes in human macrophages, J Scott Ferguson, Jennifer L. Martin, Abul K. Azad, Travis R. McCarthy, Peter B. Kang, Dennis R. Voelker, Erika C. Crouch, and Larry S. Schlesinger

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PGC-1 coactivators: Inducible regulators of energy metabolism in health and disease, Brian N. Finck and Daniel P. Kelly

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Effectiveness of enterobacterial repetitive intergenic consensus PCR and random amplified polymorphic DNA fingerprinting for Helicobacter pylori strain differentiation, S. Alison Finger, Billie Velapatino, Margaret Kosek, Livia Santivanez, Daiva Dailidiene, Willi Quino, Jacqueline Balqui, Phabiola Herrera, Douglas E. Berg, and Robert H. Gilman

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Computational hyperspectral interferometry for studies of brain function: Proof of concept, Douglas J. Fox, Hana T. Velde, Chrysanthe Preza, Joseph A. O'Sullivan, William H. Smith, and Thomas A. Woolsey

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Nicotine delays tendon-to-bone healing in a rat shoulder model, L. M. Galatz, M. J. Silva, S. Y. Rothermich, M. A. Zaegel, N. Havlioglu, and S. Thomopoulos

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Nipped-A, the Tra1/TRRAP subunit of the Drosophila SAGA and Tip60 complexes, has multiple roles in Notch signaling during wing development, Maria Gause, Joel C. Eissenberg, Any F. MacRae, Maia Dorsett, Ziva Misulovin, and Dale Dorsett

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Phylogeny based discovery of regulatory elements, Jason Gertz, Justin C. Fay, and Barak A. Cohen

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Volumetric measurements of lung nodules with multi-detector row CT: Effect of changes in lung volume, Jin Mo Goo, Kwang Gi Kim, David S. Gierada, Mario Castro, and Kyongtae T. Bae

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Femoral deformity in tibia vara, J. Eric Gordon, David J. King, Scott J. Luhmann, Matthew B. Dobbs, and Perry L. Schoenecker

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A phase I trial of docetaxel and vinorelbine in patients with advanced non-small cell lung cancer, Ramaswamy Govindan, Wan-Teck Lim, Matthew A. Arquette, Sherry A. Goodner, Carole L. Fears, Joanne E. Mortimer, and Paula M. Fracasso

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Current concepts review: Management of elbow osteoarthritis, Gregory D. Gramstad and Leesa M. Galatz

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Chemokine signaling regulates apoptosis as well as immune cell traffic in host defense, Mitchell H. Grayson and Michael J. Holtzman

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Genetic variation in the zebrafish, Victor Guryev, Marco J. Koudijs, Eugene Berezikov, Stephen L. Johnson, Ronald H.A. Plasterk, Fredericus J.M. Van Eeden, and Edwin Cuppen

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Harnessing preclinical mouse models to inform human clinical cancer trials, David H. Gutmann, Kim Hunter-Schaedle, and Kevin M. Shannon

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Molecular subtypes of breast cancer in relation to paclitaxel response and outcomes in women with metastatic disease: Results from CALGB 9342, Lyndsay N. Harris, Gloria Broadwater, Nancy U. Lin, Alexander Miron, Stuart J. Schnitt, David Cowan, Jonathan Lara, Ira Bleiweiss, Donald Berry, Matthew Ellis, Daniel F. Hayes, Eric P. Winer, and Lynn Dressler

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Mechanistic insights into the regulation of the spermatogonial stem cell niche, Rex A. Hess, Paul S. Cooke, Marie-Claude Hofmann, and Kenneth M. Murphy

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Lysosomal phospholipase A2 and phospholipidosis, Miki Hiraoka, Akira Abe, Ye Lu, Kui Yang, Xianlin Han, Richard Gross, and James A. Shayman

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Elastin fragments drive disease progression in a murine model of emphysema, A. McGarry Houghton, Pablo A. Quintero, David L. Perkins, Dale K. Kobayashi, Diane G. Kelley, Luiz A. Marconcini, Robert P. Mecham, Robert M. Senior, and Steven D. Shapiro

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Application of a superword array in genome assembly, Xiaoqiu Huang, Shiaw-Pyng Yang, Asif T. Chinwalla, LaDeana W. Hillier, Patrick Minx, Elaine R. Mardis, and Richard K. Wilson

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Bigenic mouse models of focal segmental glomerulosclerosis involving pairwise interaction of CD2AP, Fyn, and synaptopodin, Tobias B. Huber, Christopher Kwoh, Hui Wu, Katsuhiko Asanuma, Markus Gödel, Björn Hartleben, Ken J. Blumer, Jeffrey H. Miner, Peter Mundel, and Andrey S. Shaw

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Essential role of Vav family guanine nucleotide exchange factors in EphA receptor-mediated angiogenesis, Sonja G. Hunter, Guanglei Zhuang, Dana Brantley-Sieders, Wojciech Swat, Christopher W. Cowan, and Jin Chen

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The molecular portraits of breast tumors are conserved across microarray platforms, Zhiyuan Hu, Cheng Fan, Daniel S. Oh, J S. Marron, Xiaping He, Bahjat F. Qaqish, Chad Livasy, Lisa A. Carey, Evangeline Reynolds, Lynn Dressler, Andrew Nobel, Joel Parker, Matthew G. Ewend, Lynda R. Sawyer, Junyuan Wu, Yudong Liu, Rita Nanda, Maria Tretiakova, Alejandra Ruiz Orrico, Donna Dreher, Juan P. Palazzo, Laurent Perreard, Edward Nelson, Mary Mone, Heidi Hansen, Michael Mullins, John F. Quackenbush, Matthew J. Ellis, Olufunmilayo I. Olopade, Philip S. Bernard, and Charles M. Perou

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ShiA abrogates the innate T-cell response to Shigella flexneri infection, Molly A. Ingersoll and Arturo Zychlinsky

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Pigment pattern in jaguar/obelix zebrafish is caused by a Kir7.1 mutation: Implications for the regulation of melanosome movement, Motoko Iwashita, Masakatsu Watanabe, Masaru Ishii, Tim Chen, Stephen L. Johnson, Yoshihisa Kurachi, Norihiro Okada, and Shigeru Kondo

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Proteinuria precedes podocyte abnormalities in Lamb2-/- mice, implicating the glomerular basement membrane as an albumin barrier, George Jarad, Jeanette Cunningham, Andrey S. Shaw, and Jeffrey H. Miner

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Human sensory-evoked responses differ coincident with either "fusion-memory" or "flash-memory", as shown by stimulus repetition-rate effects, Don L. Jewett, Toryalai Hart, Linda J. Larson-Prior, Bill Baird, Marram Olson, Michael Trumpis, Katherine Makayed, and Payam Bavafa

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A dopamine transporter polymorphism is a risk factor for borderline personality disorder in depressed patients, Peter R. Joyce, Patrick C. McHugh, Janice M. McKenzie, Patrick F. Sullivan, Roger T. Mulder, Suzanne E. Luty, Janet D. Carter, Christopher M. Frampton, and C. R. Cloninger

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Maturation of intracellular Escherichia coli communities requires SurA, Sheryl S. Justice, Scott R. Lauer, Scott J. Hultgren, and David A. Hunstad