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Submissions from 2007

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Evolution of symbiotic bacteria in the distal human intestine, Jian Xu, Michael A. Mahowald, Ruth E. Lay, Catherine A. Lozupone, Micah Hamady, Eric C. Martens, Bernard Henrissat, Pedro M. Coutinho, Patrick Minx, Philippe Latreille, Holland Cordum, Andrew Van Brunt, Kyung Kim, Robert S. Fulton, Lucinda A. Fulton, Sandra W. Clifton, Richard K. Wilson, Robin D. Knight, and Jeffrey I. Gordon

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Shotgun lipidomics identifies a paired rule for the presence of isomeric ether phospholipid molecular species, Kui Yang, Zhongdan Zhao, Richard W. Gross, and Xianlin Han

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Coronavirus replication does not require the autophagy gene ATG5, Zijiang Zhao, Larissa B. Thackray, Brian C. Miller, Teresa M. Lynn, Michelle M. Becker, Eric Ward, Noboru N. Mizushima, Mark R. Denison, and Herbert W. Virgin

Submissions from 2006

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Contrasting models of genetic co-morbidity for cannabis and other illicit drugs in adult Australian twins, A. Agrawal, M. T. Lynskey, K. K. Bucholz, N. G. Martin, P. A F Madden, and A. C. Heath

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Alteration in irrigant flow and deflection of flexible ureteroscopes with Nitinol baskets, Caroline D. Ames, Juan M. Perrone, Kyle J. Weld, Kelley V. Foyil, Yan Yan, Ramakrishna Venkatesh, and Jaime Landman

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Pharmacologic manipulation of the porcine ureter: Acute impact of topical drugs on ureteral diameter and peristaltic activity, Caroline D. Ames, Kyle J. Weld, Stephen T. Dryer, Greg Hruby, Scott D. Minor, Yan Yan, Robert S. Figenshau, Sam Bhayani, Jaime Landman, and Ramakrishna Venkatesh

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Evaluation of laparoscopic performance with alteration in angle of vision, Caroline Ames, Alison J. Frisella, Yan Yan, Peter Shulam, and Jaime Landman

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C5a and Fcγ receptors: A mutual admiration society, John P. Atkinson

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Bypassing complement: Evolutionary lessons and future implications, John P. Atkinson and Michael M. Frank

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Effect of exercise training on in vitro LDL oxidation and free radical-induced hemolysis: The HERITAGE family study, Denis Blache, Suzanne Lussier-Cacan, Jacques Gagnon, Arthur S. Leon, D.C. Rao, James S. Skinner, Jack H. Wilmore, Tuomo Rankinen, Claude Bouchard, and Jean Davignon

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Long-term memory deficits in Pavlovian fear conditioning in Ca2+/calmodulin kinase kinase α-deficient mice, Frank Blaeser, Matthew J. Sanders, Nga Truong, Shanelle Ko, Long Jun Wu, David F. Wozniak, Michael S. Fanselow, Min Zhuo, and Talal A. Chatila

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A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles, Li-Wei Chang, Rakesh Nagarajan, Jeffrey A. Magee, Jeffrey Milbrandt, and Gary D. Stormo

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Transcriptional regulation of metabotropic glutamate receptor 2/3 expression by the NF-κB pathway in primary dorsal root ganglia neurons: A possible mechanism for the analgesic effect of L-acetylcarnitine, Santina Chiechio, Agata Copani, Laura De Petris, Maria Elena P. Morales, Ferdinando Nicoletti, and Robert W. Gereau IV

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Characterization of multimeric complexes formed by the human PTB1 protein on RNA, Caroline Clerte and Kathleen B. Hall

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Toll-like receptors and IFN-α: Partners in autoimmunity, Marco Colonna

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Mechanisms of sympathoadrenal failure and hypoglycemia in diabetes, Philip E. Cryer

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The type and frequency of fetal renal disorders and management of renal pelvis dilatation, Jeffrey M. Dicke, Valerie M. Blanco, Yan Yan, and Douglas E. Coplen

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Relationships between upper-limb functional limitation and self-reported disability 3 months after stroke, Alexander W. Dromerick, Catherine E. Lang, Rebecca Birkenmeier, Michele G. Hahn, Shirley A. Sahrmann, and Dorothy F. Edwards

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Surfactant protein D increases fusion of Mycobacterium tuberculosis- containing phagosomes with lysosomes in human macrophages, J Scott Ferguson, Jennifer L. Martin, Abul K. Azad, Travis R. McCarthy, Peter B. Kang, Dennis R. Voelker, Erika C. Crouch, and Larry S. Schlesinger

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PGC-1 coactivators: Inducible regulators of energy metabolism in health and disease, Brian N. Finck and Daniel P. Kelly

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Volumetric measurements of lung nodules with multi-detector row CT: Effect of changes in lung volume, Jin Mo Goo, Kwang Gi Kim, David S. Gierada, Mario Castro, and Kyongtae T. Bae

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A phase I trial of docetaxel and vinorelbine in patients with advanced non-small cell lung cancer, Ramaswamy Govindan, Wan-Teck Lim, Matthew A. Arquette, Sherry A. Goodner, Carole L. Fears, Joanne E. Mortimer, and Paula M. Fracasso

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Chemokine signaling regulates apoptosis as well as immune cell traffic in host defense, Mitchell H. Grayson and Michael J. Holtzman

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Harnessing preclinical mouse models to inform human clinical cancer trials, David H. Gutmann, Kim Hunter-Schaedle, and Kevin M. Shannon

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Mechanistic insights into the regulation of the spermatogonial stem cell niche, Rex A. Hess, Paul S. Cooke, Marie-Claude Hofmann, and Kenneth M. Murphy

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Lysosomal phospholipase A2 and phospholipidosis, Miki Hiraoka, Akira Abe, Ye Lu, Kui Yang, Xianlin Han, Richard Gross, and James A. Shayman

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Elastin fragments drive disease progression in a murine model of emphysema, A. McGarry Houghton, Pablo A. Quintero, David L. Perkins, Dale K. Kobayashi, Diane G. Kelley, Luiz A. Marconcini, Robert P. Mecham, Robert M. Senior, and Steven D. Shapiro

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Bigenic mouse models of focal segmental glomerulosclerosis involving pairwise interaction of CD2AP, Fyn, and synaptopodin, Tobias B. Huber, Christopher Kwoh, Hui Wu, Katsuhiko Asanuma, Markus Gödel, Björn Hartleben, Ken J. Blumer, Jeffrey H. Miner, Peter Mundel, and Andrey S. Shaw

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Proteinuria precedes podocyte abnormalities in Lamb2-/- mice, implicating the glomerular basement membrane as an albumin barrier, George Jarad, Jeanette Cunningham, Andrey S. Shaw, and Jeffrey H. Miner

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Human sensory-evoked responses differ coincident with either "fusion-memory" or "flash-memory", as shown by stimulus repetition-rate effects, Don L. Jewett, Toryalai Hart, Linda J. Larson-Prior, Bill Baird, Marram Olson, Michael Trumpis, Katherine Makayed, and Payam Bavafa

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Dual infection with Mycobacterium tuberculosis and Pneumocystis jiroveci lymphadenitis in a patient with HIV infection: case report and review of the literature, Thana Khawcharoenporn, Anucha Apisarnthanarak, Dussadee Sakonlaya, Linda M. Mundy, and Thomas C. Bailey

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Proteasome activator PA200 is required for normal spermatogenesis, Bernard Khor, Andrea L. Bredemeyer, Ching-Yu Huang, Isaiah R. Turnbull, Ryan Evans, Leonard B. Maggi Jr., J. Michael White, Laura M. Walker, Kay Carnes, Rex A. Hess, and Barry P. Sleckman

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Glucocorticoids suppress bone formation via the osteoclast, Hyun-Ju Kim, Haibo Zhao, Hideki Kitaura, Sandip Bhattacharyya, Judson A. Brewer, Louis J. Muglia, Patrick Ross, and Steven L. Teitelbaum

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Maternal alcohol use disorder and offspring ADHD: Disentangling genetic and environmental effects using a children-of-twins design, Valerie S. Knopik, Andrew C. Heath, Theodore Jacob, Wendy S. Slutske, Kathleen K. Bucholz, Pamela A F Madden, Mary Waldron, and Nicholas G. Martin

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The intensive care unit as a research laboratory: Developing strategies to prevent antimicrobial resistance, Marin H. Kollef

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Blinded comparison of repetitive-sequence PCR and multilocus sequence typing for genotyping methicillin-resistant Staphylococcus aureus isolates from a children's hospital in St. Louis, Missouri, Robert S. Liao, Gregory A. Storch, Richard S. Buller, Rachel C. Orscheln, Elaine R. Mardis, Jon R. Armstrong, and W. Michael Dunne Jr.

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Regulation of SpeB in Streptococcus pyogenes by pH and NaCl: a model for in vivo gene expression, Jennifer A. Loughman and Michael Caparon

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Risperidone in preschool children with autistic spectrum disorders: an investigation of safety and efficacy, Joan Luby, Christine Mrakotsky, Melissa Meade Stalets, Andy Belden, Amy Heffelfinger, Meghan Williams, and Edward Spitznagel

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PLCγ2 regulates osteoclastogenesis via its interaction with ITAM proteins and GAB2, Dailing Mao, Holly Epple, Brian Uthgenannt, Deborah V. Novack, and Roberta Faccio

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Physical map-assisted whole-genome shotgun sequence assemblies, David Messina, Shiaw-Pyng Yang, Wesley C. Warren, John W. Wallis, LaDeana W. Hillier, Asif T. Chinwalla, and Richard K. Wilson

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Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE), Jason C. Mills and et al

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Biology and genome of Trichinella spiralis, Makedonka Mitreva and Douglas P. Jasmer

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Codon usage patterns in Nematoda: Analysis based on over 25 million codons in thirty-two species, Makedonka Mitreva, Michael C. Wendl, John Martin, Todd Wylie, Yong Yin, Allan Larson, John Parkinson, Robert H. Waterston, and James P. McCarter

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Childhood sexual abuse and risks for licit and illicit drug-related outcomes: A twin study, Elliot C. Nelson, Andrew C. Heath, Michael T. Lynskey, Kathleen K. Bucholz, Pamela A F Madden, Dixie J. Statham, and Nicholas G. Martin

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Genotyping of toxoplasma gondii by multiplex PCR and peptide-based serological testing of samples from infants in Poland diagnosed with congenital toxoplasmosis, Dorota Nowakowska, Iris Colon, Jack S. Remington, Michael Grigg, Elzbieta Golab, J. Wilczynski, and L. D. Sibley

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Evaluating the efficiency of using second-trimester nasal bone hypoplasia as a single or a combined marker for fetal aneuploidy, Anthony O. Odibo, Harish M. Sehdev, Laura Sproat, Claudia Parra, Linda Odibo, Linda Dunn, and George A. Macones

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Genetic analyses of DSM-IV nicotine withdrawal in adult twins, Michele L. Pergadia, Andrew C. Heath, Nicholas G. Martin, and Pamela A F Madden

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Ciprofloxacin-resistant gram-negative bacilli in the fecal microflora of children, Xuan Qin, Yasmin Razia, James R. Johnson, Jennifer R. Stapp, Daniel R. Boster, Treva Tsosie, Donna L. Smith, Christopher R. Braden, Kathryn Gay, Frederick J. Angulo, and Phillip I. Tarr

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A real-time PCR-based assay for detection of Wuchereria bancrofti DNA in blood and mosquitoes, Ramakrishna U. Rao, Laura J. Atkinson, Reda M.R. Ramzy, Hanan Helmy, Hoda A. Farid, Moses J. Bockarie, Melinda Susapu, Sandra J. Laney, Steven A. Williams, and Gary J. Weil

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Detection of Brugia parasite DNA in human blood by real-time PCR, Ramakrishna U. Rao, Gary J. Weil, Kerstin Fischer, Taniawati Supali, and Peter Fischer

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Expression of putative virulence factors of Escherichia coli O157:H7 differs in bovine and human infections, Rebecca A. Rashid, Tami A. Tabata, Melissa J. Oatley, Thomas E. Besser, Phillip I. Tarr, and Steve L. Moseley

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Insulin resistance and atherosclerosis, Clay F. Semenkovich

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Geminin's double life: Chromatin connections that regulate transcription at the transition from proliferation to differentiation, Seongjin Seo and Kristen L. Kroll

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Blocking monoclonal antibodies specific for mouse IFN-α/β receptor subunit 1 (IFNAR-1) from mice immunized by in vivo hydrodynamic transfection, Kathleen C F Sheehan, Koon Siew Lai, Gavin P. Dunn, Allen T. Bruce, Mark S. Diamond, Jennifer D. Heutel, Corazon Dungo-Arthur, Javier A. Carrero, J. Michael White, Paul J. Herzog, and Robert D. Schreiber

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PKR-dependent autophagic degradation of herpes simplex virus type 1, Zsolt Talloczy, Herbert W. Virgin IV, and Beth Levine

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Cortactin has an essential and specific role in osteoclast actin assembly, Shandiz Tehrani, Roberta Faccio, Indra Chandrasekar, F. Patrick Ross, and John A. Cooper

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The alchemy of tendon repair: A primer for the (S)mad scientist, Dwight A. Towler and Richard H. Gelberman

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Blocking airway mucous cell metaplasia by inhibiting EGFR antiapoptosis and IL-13 transdifferentiation signals, Jeffrey W. Tyner, Edy Y. Kim, Kyotaro Ide, Mark R. Pelletier, William T. Roswit, Jeffrey D. Morton, John T. Battaile, Anand C. Patel, G. Alexander Patterson, Mario Castro, Melanie S. Spoor, Yingjian You, Steven L. Brody, and Michael Holtzman

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Identification of non-dot/icm suppressors of the Legionella pneumophila △dotL lethality phenotype, Carr D. Vincent, Benjamin A. Buscher, Jonathan R. Friedman, Lee Anne Williams, Patrick Bardill, and Joseph P. Vogel

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Epimorphin-/- mice have increased intestinal growth, decreased susceptibility to dextran sodium sulfate colitis, and impaired spermatogenesis, Yuan Wang, Lihua Wang, Hristo Iordanov, Elzbieta A. Sweitlicki, Qun Zheng, Shujun Jiang, Yuzhu Tang, Marc S. Levin, and Deborah C. Rubin

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Harpin mediates cell aggregation in Erwinia chrysanthemi 3937, Mee-Ngan Yap, Clemencia M. Rojas, Ching-Hong Yang, and Amy O. Charkowski

Submissions from 2005

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Low ambient O2 enhances ureteric bud branching in vitro, Tetsu Akimoto, Marc R. Hammerman, and Eiji Kusano

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FHL2 inhibits the activated osteoclast in a TRAF6-dependent manner, Shuting Bai, Hideki Kitaura, Haibo Zhao, Ju Chen, Judith M. Muller, Roland Schule, Bryant Darnay, Deborah V. Novack, Patrick Ross, and Steven L. Teitelbaum

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Eukaryotic UDP-galactopyranose mutase (GLF Gene) in microbial and metazoal pathogens, Stephen M. Beverley, Katherine L. Owens, Melissa Showalter, Cara L. Griffith, Tamara L. Doering, Victoria C. Jones, and Michael R. McNeil

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Phenotypic and molecular analysis of tellurite resistance among enterohemorrhagic Escherichia coli O157:H7 and sorbitol-fermenting O157:NM clinical isolates, Martina Bielaszewska, Phillip I. Tarr, Helge Karch, Wenlan Zhang, and Werner Mathys

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Molecular profiling and phenotype analysis of Escherichia coli O26:H11 and O26:NM: Secular and geographic consistency of enterohemorrhagic and enteropathogenic isolates, Martina Bielaszewska, Wenlan Zhang, Phillip I. Tarr, Anne-Katharina Sonntag, and Helge Karch

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An interstitial deletion-insertion involving chromosomes 2p25.3 and Xq27.1, near SOX3, causes X-linked recessive hypoparathyroidism, Michael R. Bowl, Andrew Nesbit, Brian Harding, Elaine Levy, Andrew Jefferson, Emanuela Volpi, Karine Rizzoti, Robin Lovell-Badge, David Schlessinger, Michael P. Whyte, and Rajesh V. Thakker

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Anti-Aβ antibody treatment promotes the rapid recovery of amyloid-associated neuritic dystrophy in PDAPP transgenic mice, Robert P. Brendza, Brain J. Bacskai, John R. Cirrito, Kelly A. Simmons, Jesse M. Skoch, William E. Klunk, Chester A. Mathis, Kelly R. Bales, Steven M. Paul, Bradley T. Hyman, and David M. Holtzman

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Antioxidant supplementation for the prevention of kwashiorkor in Malawian children: Randomised, double blind, placebo controlled trial, Heather Ciliberto, Michael Ciliberto, Andree Briend, Per Ashorn, Dennis Bier, and Mark Manary

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P-glycoprotein deficiency at the blood-brain barrier increases amyloid-β deposition in an Alzheimer disease mouse model, John R. Cirrito, Rashid Deane, Anne M. Fagan, Michael L. Spinner, Maia Parsadanian, Mary Beth Finn, Hong Jiang, Julie L. Prior, Abhay Sagare, Kelly R. Bales, Steven M. Paul, Berislav V. Zlokovic, David Piwinca-Worms, and David M. Holtzman

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Periacetabular osteotomy for the treatment of severe acetabular dysplasia, John C. Clohisy, Susan E. Barrett, J. Eric Gordon, Eliana D. Delgado, and Perry L. Schoenecker

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Identification of functional transcription factor binding sites using closely related Saccharomyces species, Scott W. Doniger, Juyoung Huh, and Justin C. Fay

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CD36 deficiency impairs intestinal lipid secretion and clearance of chylomicrons from the blood, Victor A. Drover, Mohammad Ajmal, Fatiha Nassir, Nicholas O. Davidson, Andromeda M. Nauli, Daisy Sahoo, Patrick Tso, and Nada A. Abumrad

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Effects of combined diethylcarbamazine and albendazole treatment of bancroftian filariasis on parasite uptake and development in Culex pipiens L., Hoda A. Farid; Ragaa E. Hammad; Marah M. Hassan; Reda M.R, Ramzy; Maged El Setouhy; and Gary J. Weil

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Dominant negative effects of the AML1/ETO fusion oncoprotein, Timothy S. Fenske, Gina Pengue, and Timothy A. Graubert

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Pseudomonas aeruginosa acquires biofilm-like properties within airway epithelial cells, Raquel Garcia-Medina, W. Michael Dunne, Pradeep K. Singh, and Steven L. Brody

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How the cell deals with DNA nicks, Parie Garg and Peter M.J. Burgers

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Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics, Jason Gertz, Linda Riles, Peter Turnbaugh, Su-Wen Ho, and Barak A. Cohen

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The relationship between stressful life events, the serotonin transporter (5-HTTLPR) genotype and major depression, Nathan A. Gillespie, John B. Whitfield, Ben Williams, Andrew C. Heath, and Nicholas G. Martin

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Adolescent alcohol use is a risk factor for adult alcohol and drug dependence: Evidence from a twin design, Julia D. Grant, Jeffrey F. Scherrer, Michael T. Lynskey, Michael J. Lyons, Seth A. Eisen, Ming T. Tsuang, William R. true, and Kathleen K. Bucholz

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Yersinia enterocolitica invasin-dependent and invasin-independent mechanisms of systemic dissemination, Scott A. Handley, Rodney D. Newberry, and Virginia L. Miller

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Punctuated duplication seeding events during the evolution of human chromosome 2p11, Julie E. Horvath, Cassandra L. Gulden, Rhea U. Vallente, Marla Y. Eichler, Mario Ventura, John D. McPherson, Tina A. Graves, Richard K. Wilson, Stuart Schwartz, Mariano Rocchi, and Evan E. Eichler

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Periplasmic peptidyl prolyl cis-trans isomerases are not essential for viability, but SurA Is required for pilus biogenesis in Escherichia coli, Sheryl S. Justice, David A. Hunstad, Jill Reiss Harper, Amy R. Duguay, Jerome S. Pinkner, James Bann, Carl Frieden, Thomas J. Silhavy, and Scott J. Hultgren

Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana, Manpreet S. Katari, Vivekanand Balija, Richard K. Wilson, Robert A. Martienssen, and W. Richard McCombie

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Genotyping of Toxoplasma gondii strains from immunocompromised patients reveals high prevalence of type I strains, A. Khan, C. Su, M. German, G. A. Storch, D. B. Clifford, and L. David Sibley

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M-CSF mediates TNF-induced inflammatory osteolysis, Hideki Kitaura, Ping Zhou, Hyun-Ju Kim, Deborah V. Novack, Patrick Ross, and Steven L. Teitelbaum

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Errors in radiation oncology: a study in pathways and dosimetric impact, Eric E. Klein, Robert E. Drzymala, James A. Purdy, and Jeff M. Michalski

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Contributions of parental alcoholism, prenatal substance exposure, and genetic transmission to child ADHD risk : A female twin study, Valerie S. Knopik, Elizabeth P. Sparrow, Pamela A F Madden, Kathleen K. Bucholz, James J. Hudziak, Wendy Reich, Wendy S. Slutske, Julia D. Grant, Tara L. McLaughlin, Alexandre Todorov, Richard D. Todd, and Andrew C. Heath

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Comparison of running and interrupted vesicourethral anastomoses in a porcine model, David Lieber, Veronique Tran, Jay Belani, Caroline Ames, Kevin Morissey, Yan Yan, Peter Humphrey, Ramakrishna Venkatesh, and Jaime Landman

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Pseudomonas aeruginosa bloodstream infection: Importance of appropriate initial antimicrobial treatment, Scott T. Micek, Ann E. Lloyd, David J. Ritchie, Richard M. Reichley, Victoria J. Fraser, and Marin H. Kollef

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Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species, Pat Minx, Holly Cordum, Richard Wilson, and et al

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Delaying the empiric treatment of Candida bloodstream infection until positive blood culture results are obtained: A potential risk factor for hospital mortality, Matthew Morrell, Victoria J. Fraser, and Marin H. Kollef

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Amprenavir and efavirenz pharmacokinetics before and after the addition of nelfinavir, indinavir, ritonavir, or saquinavir in seronegative individuals, Gene D. Morse, Susan Rosenkranz, Michael F. Para, Yoninah Segal, Robin DiFrancesco, Elizabeth Adams, Barbara Brizz, Kevin E. Yarasheski, Richard C. Reichman, and ACTG 5043 Protocol Team

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Time-dependent whole-body fluorescence tomography of probe bio-distributions in mice, Sachin V. Patwardhan, Sharon R. Bloch, Samuel Achilefu, and Joseph P. Culver

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Murine acute promyelocytic leukemia cells can be recognized and cleared in vivo by adaptive immune mechanisms, Jessica L. Pollock, Andrew A. Lane, Kelly Schrimpf, and Timothy J. Ley

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Targeted and restricted complement activation on acrosome-reacted spermatozoa, Rebecca C. Riley-Vargas, Susan Lanzendorf, and John P. Atkinson

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Incubation of metanephroi with vitamin D3 increases numbers of glomeruli, Sharon A. Rogers, David Droege, Adriana Dusso, and Marc R. Hammerman

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes, John Spieth, LaDeana W. Hillier, Richard K. Wilson, and et al

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Non-linear heart rate variability and risk stratification in cardiovascular disease, Phyllis K. Stein and Anand Reddy

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Toward an understanding of risk factors for binge-eating disorder in black and white women: A community-based case-control study, Ruth H. Striegel-Moore, Christopher G. Fairburn, Denise E. Wilfley, Kathleen M. Pike, Faith-Anne Dohm, and Helena C. Kraemer