The Open Access Publications collection contains peer-reviewed articles authored by Washington University School of Medicine faculty that have been published in open access journals or authorized by the publishers for open access availability. Open access works are generally defined as being publicly available online and free of most licensing and copyright restrictions. The Bernard Becker Medical Library maintains this collection in support of Washington University’s commitment to the principles of open access publishing and making the scholarly work and research results of our faculty as widely and easily available as possible.
You can find more information about Washington University's Open Access Resolution in Becker Medical Library's Open Access subject guide “OA Resolution at WU”
Submissions from 2005
A surface groove essential for viral Bcl-2 function during chronic infection in vivo, Joy Loh, Qiulong Huang, Andrew M. Petros, David Nettesheim, Linda F. van Dyk, Lucia Labrada, Samuel H. Speck, Beth Levine, Edward T. Olejniczak, and Herbert W. Virgin IV
YB-1 is important for late-stage embryonic development, optimal cellular stress responses, and the prevention of premature senescence, Zhi Hong Lu, Jason T. Books, and Timothy J. Ley
hnRNP K binds a core polypyrimidine element in the eukaryotic translation initiation factor 4E (eIF4E) promoter, and its regulation of eIF4E contributes to neoplastic transformation, Mary Lynch, Li Chen, Michael J. Ravitz, Sapna Mehtani, Kevin Korenblat, Michael J. Pazin, and Emmett V. Schmidt
Limitations of DSM-IV operationalizations of alcohol abuse and dependence in a sample of Australian twins, Michael T. Lynskey, Elliot C. Nelson, Rosalind J. Neuman, Kathleen K. Bucholz, Pamela A.F. Madden, Valerie S. Knopik, Wendy Slutske, John B. Whitfield, Nicholas G. Martin, and Andrew C. Heath
ACT-5 is an essential Caenorhabditis elegans actin required for intestinal microvilli formation, A. J. MacQueen, J. J. Baggett, N. Perumov, R. A. Bauer, T. Januszewski, L. Schriefer, and J. A. Waddle
Complications of fluoroscopically guided extraforaminal cervical nerve blocks: An analysis of 1036 injections, Daniel J. Ma III, Louis A. Gilula, and K. Daniel Riew
Clinical challenges and unmet needs in the management of complicated intra-abdominal infections, John E. Mazuski
A novel endogenous inhibitor of the secreted streptococcal NAD-glycohydrolase, Michael A. Meehl, Jerome S. Pinkner, Patricia J. Anderson, Scott J. Hultgren, and Michael G. Caparon
Phylogeography and population strucure of Aedes aegypti in Arizona, Samuel A. Merrill, Frank B. Ramberg, and Henry H. Hagedorn
Pseudomonas aeruginosa bloodstream infection: Importance of appropriate initial antimicrobial treatment, Scott T. Micek, Ann E. Lloyd, David J. Ritchie, Richard M. Reichley, Victoria J. Fraser, and Marin H. Kollef
Mutant kinesin-2 motor subunits increase chromosome loss, Mark S. Miller, Jessica M. Esparza, Andrew M. Lippa, Fordyce G. Lux III, Douglas G. Cole, and Susan K. Dutcher
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species, Pat Minx, Holly Cordum, Richard Wilson, and et al
Investigating hookworm genomes by comparative analysis of two Ancylostoma species, Makedonka Mitreva, James P. McCarter, Prema Arasu, John Hawdon, John Martin, Mike Dante, Todd Wylie, Jian Xu, Jason E. Stajich, Wadim Kapulkin, Sandra W. Clifton, Robert H. Waterston, and Richard K. Wilson
Delaying the empiric treatment of Candida bloodstream infection until positive blood culture results are obtained: A potential risk factor for hospital mortality, Matthew Morrell, Victoria J. Fraser, and Marin H. Kollef
Evaluation of seaFAST, a rapid fluorescent in situ hybridization test, for detection of Helicobacter pylori and resistance to clarithromycin in paraffin-embedded biopsy sections, Julie M. Morris, Alisa L. Reasonover, Michael G. Bruce, Dana L. Bruden, Brian J. McMahon, Frank D. Sacco, Douglas E. Berg, and Alan J. Parkinson
Amprenavir and efavirenz pharmacokinetics before and after the addition of nelfinavir, indinavir, ritonavir, or saquinavir in seronegative individuals, Gene D. Morse, Susan Rosenkranz, Michael F. Para, Yoninah Segal, Robin DiFrancesco, Elizabeth Adams, Barbara Brizz, Kevin E. Yarasheski, Richard C. Reichman, and ACTG 5043 Protocol Team
Estimation of prevalence of DSM-IV and latent class-defined ADHD subtypes in a population-based sample of child and adolescent twins, Rosalind J. Neuman, Nantawat Sitdhiraksa, Wendy Reich, Ted H.-C. Ji, Cynthia A. Joyner, Ling-Wei Sun, and Richard D. Todd
Results of preoperative pulmonary function testing of adolescents with idiopathic scoliosis: A study of six hundred and thirty-one patients, Peter O. Newton, Frances D. Faro, Sohrab Gollogly, Randal R. Betz, Lawrence G. Lenke, and Thomas G. Lowe
Definition of target antigens for naturally occurring CD4+ CD25+ regulatory T cells, Hiroyoshi Nishikawa, Takuma Kato, Isao Tawara, Kanako Saito, Hiroaki Ikeda, Kagemasa Kuribayashi, Paul M. Allen, Robert D. Schreiber, Shimon Sakaguchi, Lloyd J. Old, and Hiroshi Shiku
Impact of two rounds of mass drug administration using diethylcarbamazine combined with albendazole on the prevalence of Brugia timori and of intestinal helminths on Alor Island, Indonesia, Tim Oqueka, Taniawati Supali, Is Suhariah Ismid, Purnomo, Paul Rückert, Mark Bradley, and Peter Fischer
Antimalarial activity of human immunodeficiency virus type 1 protease inhibitors, Sunil Parikh, Jiri Gut, Eva Istvan, Daniel E. Goldberg, Diane V. Havlir, and Philip J. Rosenthal
Development of adjacent-level ossification in patients with an anterior cervical plate, Jong-Beom Park, Yong-Sun Cho, and K. Daniel Riew
Hypertrophy of ligamentum flavum in lumbar spinal stenosis associated with increased proteinase inhibitor concentration, Jong-Beom Park, Jin-Kyung Lee, Sung-Jin Park, and K. Daniel Riew
Time-dependent whole-body fluorescence tomography of probe bio-distributions in mice, Sachin V. Patwardhan, Sharon R. Bloch, Samuel Achilefu, and Joseph P. Culver
Rab3D regulates a novel vesicular trafficking pathway that is required for osteoclastic bone resorption, Nathan J. Pavlos, Jiake Xu, Dietmar Riedel, Joyce S. G. Yeoh, Steven L. Teitelbaum, John M. Papadimitriou, Reinhard Jahn, F. Patrick Ross, and Ming H. Zheng
Genetic epidemiology of diabetes, M. Alan Permutt, Jonathon Wasson, and Nancy Cox
Murine acute promyelocytic leukemia cells can be recognized and cleared in vivo by adaptive immune mechanisms, Jessica L. Pollock, Andrew A. Lane, Kelly Schrimpf, and Timothy J. Ley
Comparison of a novel endoscope holder and traditional camera assistant for laparoscopic simple nephrectomy in a porcine model, Sejal S. Quayle, W. Collyer, R. Vanlangedonck, and Jaime Landman
Comorbidity between ADHD and symptoms of bipolar disorder in a community sample of children and adolescents, Wendy Reich, Rosalind J. Neuman, Heather E. Volk, Cynthia A. Joyner, and Richard D. Todd
Epigenetic inactivation and aberrant transcription of CSMD1 in squamous cell carcinoma cell lines, Toni M. Richter, Benton D. Tong, and Steven B. Scholnick
Targeted and restricted complement activation on acrosome-reacted spermatozoa, Rebecca C. Riley-Vargas, Susan Lanzendorf, and John P. Atkinson
Evolutionary models for insertions and deletions in a probabilistic modeling framework, Elena Rivas
Recruitment of Gr-1+ monocytes is essential for control of acute toxoplasmosis, Paul M. Robben, Marie LaRegina, William A. Kuziel, and L. David Sibley
Incubation of metanephroi with vitamin D3 increases numbers of glomeruli, Sharon A. Rogers, David Droege, Adriana Dusso, and Marc R. Hammerman
Complex transcriptional control links NikABCDE-Dependent nickel transport with hydrogenase expression in Escherichia coli, Jessica L. Rowe, G. Lucas Starnes, and Peter T. Chivers
CAGER: Classification analysis of gene expression regulation using multiple information sources, Jianhua Ruan and Weixiong Zhang
Genetic analysis of the maximum drinks phenotype, Scott F. Saccone, Nancy L. Saccone, Rosalind J. Neuman, and John P. Rice
Omega-3 fatty acids decreased irritability of patients with bipolar disorder in an add-on, open label study, Kemal Sagduyu, Mehmet E. Dokucu, Bruce A. Eddy, Gerald Craigen, Claudia F. Baldassano, and Aysegül Yıldız
Potassium channels in C. elegans, Lawrence B. Salkoff, Aguan Wei, Beravan Baban, Alice Butler, Gloria L. Fawcett, Gonzalo Ferreira, and Celia M. Santi
Akt-dependent cell size regulation by the adhesion molecule on glia occurs independently of phosphatidylinositol 3-kinase and Rheb signaling, Danielle K. Scheidenhelm, Jennifer Cresswell, Carrie A. Haipek, Timothy P. Fleming, Robert W. Mercer, and David H. Gutmann
Msx2 promotes cardiovascular calcification by activating paracrine Wnt signals, Jian-Su Shao, Su-Li Cheng, Joyce M. Pingsterhaus, Nichole Charlton-Kachigian, Arleen P. Loewy, and Dwight A. Towler
Varying rates of Clostridium difficile-associated diarrhea at prevention epicenter hospitals, SeJean Sohn, Michael Climo, Daniel Diekema, Victoria Fraser, Loreen Herwaldt, Susan Marino, Gary Noskin, Trish Perl, Xiaoyan Song, Jerome Tokars, David Warren, Edward Wong, Deborah S. Yokoe, Theresa Zembower, and Kent A. Sepkowitz
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes, John Spieth, LaDeana W. Hillier, Richard K. Wilson, and et al
Overview of gene structure, John Spieth and Daniel Lawson
Clinical outcome at a minimum of five years after reconstruction of the anterior cruciate ligament, Kurt P. Spindler, Todd A. Warren, J. Claiborne Callison Jr., Michelle Secic, Sheryl B. Fleisch, and Rick W. Wright
Gap junctions regulate extracellular signal-regulated kinase signaling to affect gene transcription, Joseph P. Stains and Roberto Civitelli
Non-linear heart rate variability and risk stratification in cardiovascular disease, Phyllis K. Stein and Anand Reddy
Toward an understanding of risk factors for binge-eating disorder in black and white women: A community-based case-control study, Ruth H. Striegel-Moore, Christopher G. Fairburn, Denise E. Wilfley, Kathleen M. Pike, Faith-Anne Dohm, and Helena C. Kraemer
Natural peptides selected by diabetogenic DQ8 and murine I-Ag7 molecules show common sequence specificity, Anish Suri, James J. Walters, Michael L. Gross, and Emil R. Unanue
Age-dependent changes in susceptibility of suckling mice to individual strains of Helicobacter pylori, Hiroyuki Suto, Maojun Zhang, and Douglas E. Berg
Making connections between novel transcription factors and their DNA motifs, Kai Tan, Lee Ann McCue, and Gary D. Stormo
Diverse phenotypes resulting from polyphosphate kinase gene (ppk1) inactivation in different strains of Helicobacter pylori, Shumin Tan, Cresson D. Fraley, Maojun Zhang, Daiva Dailidiene, Arthur Kornberg, and Douglas E. Berg
Quality determination and the repair of poor quality spots in array experiments, Brian DM Tom, Walter R. Gilks, Elizabeth T. Brooke-Powell, and James W. Ajioka
DAP12 (KARAP) amplifies inflammation and increases mortality from endotoxemia and septic peritonitis, Isaiah R. Turnbull, Jonathan E. McDunn, Toshiyuki Takai, R. Reid Townsend, J. Perren Cobb, and Marco Colonna
Laparoscopic ureterocalicostomy: Development of a technique simplified by application of nitinol clips and a wet monopolar electrosurgery device, Richard Vanlangendonck, Ramakrishna Venkatesh, Christopher Vulin, Sejal Quayle, Kevin Morrissey, and Jaime Landman
Genetic networks controlling retinal injury, Felix R. Vazquez-Chona, Amna N. Khan, Chun K. Chan, Anthony N. Moore, Pramod K. Dash, M. Rosario Hernandez, Lu Lu, Elissa J. Chesler, Kenneth F. Manly, Robert W. Williams, and Eldon E. Geisert Jr.
Impact of a double-pigtail stent on ureteral peristalsis in the porcine model: Initial studies using a novel implantable magnetic sensor, Ramakrishna Venkatesh, Jaime Landman, Scott D. Minor, David I. Lee, Jamil Rehman, Richard Vanlangendonck, Maged Ragab, Kevin Morrissey, Chandru P. Sundaram, and Ralph V. Clayman
Determination of cell viability after laparoscopic tissue stapling in a porcine model, Ramakrishna Venkatesh, Jamil Rehman, Jaime Landman, David Lee, Maged E. Ragab, Chandru P. Sundaram, Peter A. Humphrey, and Ralph V. Clayman
PGC-1α coactivates PDK4 gene expression via the orphan nuclear receptor ERRα: A mechanism for transcriptional control of muscle glucose metabolism, Adam R. Wende, Janice M. Huss, Paul J. Schaeffer, Vincent Giguere, and Daniel P. Kelly
Extension of Lander-Waterman theory for sequencing filtered DNA libraries, Michael C. Wendl and W Brad Barbazuk
Gliding motility leads to active cellular invasion by Cryptosporidium parvum sporozoites, Dawn M. Wetzel, Joann Schmidt, Mark S. Kuhlenschmidt, J.P. Dubey, and L. David Sibley
Choice of residential location: Chance, family influences, or genes?, John B. Whitfield, Gu Zhu, Andrew C. Heath, and Nicholas G. Martin
The repetitive landscape of the chicken genome, Thomas Wicker, Jon S. Robertson, Stefan R. Schulze, F. Alex Feltus, Vincent Magrini, Jason A. Morrison, Elaine R. Mardis, Richard K. Wilson, Daniel G. Peterson, Andrew H. Paterson, and Robert Ivarie
Cholesterol dependence of HTLV-I infection, Matthew M. Wielgosz, Daniel A. Rauch, Kathryn S. Jones, Frank W. Ruscetti, and Lee Ratner
Uropathogenic Escherichia coli flagella aid in efficient urinary tract colonization, Kelly J. Wright, Patrick C. Seed, and Scott J. Hultgren
Macrophage migration inhibitory factor stimulated by Helicobacter pylori increases proliferation of gastric epithelial cells, Harry Hua-Xiang Xia, Shiu Kum Lam, Annie O. O. Chan, Marie Chia Mi Lin, Hsiang Fu Kung, Keiji Ogura, Douglas E. Berg, and Benjamin C. Y. Wong
Coordinate control of axon defasciculation and myelination by laminin-2 and -8, Dongren Yang, Jesse Bierman, Yukie S. Tarumi, Yong-Ping Zhong, Reshma Rangwala, Thomas M. Proctor, Yuko Miyagoe-Suzuki, Shin'ichi Takeda, Jeffrey H. Miner, Larry S. Sherman, Bruce G. Gold, and Bruce L. Patton
Transcriptional repression of the Neurofibromatosis-1 tumor suppressor by the t(8;21) fusion protein, Genyan Yang, Waleed Khalaf, Louis van de Locht, Joop H. Jansen, Meihua Gao, Mary Ann Thompson, Bert A. van der Reijden, David H. Gutmann, Ruud Delwel, D. Wade Clapp, and Scott W. Hiebert
The ponticulus posticus: Implications for screw insertion into the first cervical lateral mass, Jason P. Young, Paul H. Young, Paul A. Anderson, and K. Daniel Riew
Shiga toxin is transported from the endoplasmic reticulum following interaction with the luminal chaperone HEDJ/ERdj3, Min Yu and David B. Haslam
Divalent cation sensitivity of BK channel activation supports the existence of three distinct binding sites, Xu-Hui Zeng, Xiao-Ming Xia, and Christopher J. Lingle
Submissions from 2004
Antimicrobial use and the influence of inadequate empiric antimicrobial therapy on the outcomes of nosocomial bloodstream infections in a neonatal intensive care unit, Anucha Apisarnthanarak, Galit Holzmann-Pazgal, Aaron Hamvas, Margaret A. Olson, and Victoria J. Fraser
A novel missense mutation in the gene for gap-junction protein α3 (GJA3) associated with autosomal dominant “nuclear punctate” cataracts linked to chromosome 13q, Thomas M. Bennett, Donna S. Mackay, Harry L.S. Knopf, and Alan Shiels
Polyphosphoinositides-dependent regulation of the osteoclast actin cytoskeleton and bone resorption, Rajat S. Biswas, De Anna Baker, Keith A. Hruska, and Meenakshi A. Chellaiah
Characterization of a defensin from the sand fly Phlebotomus duboscqi induced by challenge with bacteria or the protozoan parasite Leishmania major, Nathalie Boulanger, Carl Lowenberger, Petr Volf, Raul Ursic, Lucie Sigutova, Laurence Sabatier, Milena Svobodova, Stephen M. Beverley, Gerald Spath, Reto Brun, Bernard Pesson, and Philippe Bulet
ARF impedes NPM/B23 shuttling in an Mdm2-sensitive tumor suppressor pathway, Suzanne N. Brady, Yue Yu, Leonard B. Maggi Jr., and Jason D. Weber
Contribution of glutathione peroxidase to the virulence of streptococcus pyogenes, Audrey Brenot, Katherine Y. King, Blythe Janowiak, Owen Griffith, and Michael G. Caparon
What's new in spine surgery, Keith H. Bridwell, Paul A. Anderson, Scott D. Boden, Alexander R. Vaccaro, and Jack E. Zigler
Pedicle subtraction osteotomy for the treatment of fixed sagittal imbalance: Surgical technique., Keith H. Bridwell, Stephen J. Lewis, Anthony Rinella, Lawrence G. Lenke, Christy Baldus, and Kathy Blanke
Evaluation of a real-time PCR assay using the LightCycler system for detection of parvovirus B19 DNA, Richard S. Buller and Gregory Storch
Evolutionary and functional relationships among the nontypeable Haemophilus influenzae HMW family of adhesins, Amy Z. Buscher, Katie Burmeister, Stephen J. Barenkamp, and Joseph W. St. Geme III
Type I Interferon Sensitizes Lymphocytes to Apoptosis and Reduces Resistance to Listeria Infection, Javier A. Carrero, Boris Calderon, and Emil R. Unanue
Differential requirements for Vav proteins in DAP10- and ITAM-mediated NK cell cytotoxicity, Marina Cella, Keiko Fujikawa, Ilaria Tassi, Sunjin Kim, Kevin Latinis, Shinzo Nishi, Wayne Yokoyama, Marco Colonna, and Wojciech Swat
Type III Secretion System Genes in Clinical Aeromonas Isolates, M. R. Chacón, L. Soler, E. A. Groisman, J. Guarro, and M. J. Figueras
Multiplex PCR assay for rapid detection and genotyping of Helicobacter pylori directly from biopsy specimens, Santanu Chattopadhyay, Rajashree Patra, T. Ramamurthy, Abhijit Chowdhury, Amal Santra, G. K. Dhali, S. K. Bhattacharya, Douglas E. Berg, G. Balakrish Nair, and Asish K. Mukhopadhyay
Helicobacter acinonychis: Genetic and rodent infection studies of a Helicobacter pylori-like gastric pathogen of cheetahs and other big cats, Daiva Dailidiene, Keiji Ogura, Maojun Zhang, Asish K. Mukhopadhyay, Kathryn A. Eaton, Giovanni Cattoli, Johannes G. Kusters, and Douglas E. Berg
Distinct roles for the AAA ATPases NSF and p97 in the secretory pathway, Seema Dalal, Meredith F.N. Rosser, Douglas M. Cyr, and Phyllis I. Hanson
Perceptual ‘‘read-out’’ of conjoined direction and disparity maps in extrastriate area MT, Gregory C. DeAngelis and William T. Newsome
Visual activation in prefrontal cortex is stronger in monkeys than in humans, Katrien Denys, Wim Vanduffel, Denis Fize, Koen Nelissen, Hiromasa Sawamura, Svetlana Georgieva, Rufin Vogels, David Van Essen, and Guy A. Orban
EAnnot: A genome annotation tool using experimental evidence, Li Ding, Aniko Sabo, Nicolas Berkowicz, Rekha R. Meyer, Yoram Shotland, Mark R. Johnson, Kymberlie H. Pepin, Richard K. Wilson, and John Spieth
Absent posterior tibial artery associated with idiopathic clubfoot: A report of two cases, Matthew B. Dobbs, J. Eric Gordon, and Perry L. Schoenecker
Use of an intramedullary rod for treatment of congenital pseudarthrosis of the tibia: A long-term follow-up study, Matthew B. Dobbs, Margaret M. Rich, J. Eric Gordon, Deborah A. Szymanski, and Perry L. Schoenecker
Factors Predictive of Outcome after Use of the Ponseti Method for the Treatment of Idiopathic Clubfeet, Matthew B. Dobbs, J. R. Rudzki, Derek B. Purcell, Tim Walton, Kristina R. Porter, and Christina A. Gurnett
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction, Robin D. Dowell and Sean R. Eddy
Protective role of interleukin-6 during Yersinia enterocolitica infection is mediated through the modulation of inflammatory cytokines, Peter H. Dube, Scott A. Handley, James Lewis, and Virginia L. Miller
Accurate Identification of adverse outcomes after cervical spine surgery, Charles C. Edwards II, Yekaterina Karpitskaya, Chuck Cha, John G. Heller, Carl Lauryssen, S. Timothy Yoon, and K. Daniel Riew
RNAi-mediated Hip1R silencing results in stable association between the endocytic machinery and the actin assembly machinery, Åsa E.Y. Engqvist-Goldstein, Claire X. Zhang, Sebastien Carreno, Consuelo Barroso, John E. Heuser, and David G. Drubin
Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae, Justin C. Fay, Heather L. McCullough, Paul D. Sniegowski, and Michael B. Eisen
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing, Terrence S. Furey, Mark Diekhans, Yontao Lu, Tina A. Graves, Lachlan Oddy, Jennifer Randall-Maher, LaDeana W. Hillier, Richard K. Wilson, and David Haussler
Langerhans cell histiocytosis of the spine in children: Long-term follow-up, Sumeet Garg, Samir Mehta, and John P. Dormans
