The Open Access Publications collection contains peer-reviewed articles authored by Washington University School of Medicine faculty that have been published in open access journals or authorized by the publishers for open access availability. Open access works are generally defined as being publicly available online and free of most licensing and copyright restrictions. The Bernard Becker Medical Library maintains this collection in support of Washington University’s commitment to the principles of open access publishing and making the scholarly work and research results of our faculty as widely and easily available as possible.

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Submissions from 2003

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Transposon mutagenesis of Mycobacterium marinum identifies a locus linking pigmentation and intracellular survival, Lian-Yong Gao, Richard Groger, Jeffery S. Cox, Stephen M. Beverley, Elise H. Lawson, and Eric J. Brown

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Mammalian GGAs act together to sort mannose 6-phosphate receptors, Pradipta Ghosh, Janice Griffith, Hans J. Geuze, and Stuart Kornfeld

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AP-1 binding to sorting signals and release from clathrin-coated vesicles is regulated by phosphorylation, Pradipta Ghosh and Stuart Kornfeld

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Down-regulation of CD46 by piliated neisseria gonorrhoeae, Darcy B. Gill, Michael Koomey, Janne G. Cannon, and John P. Atkinson

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Tyrosine-phosphorylated and nonphosphorylated isoforms of α-dystrobrevin: roles in skeletal muscle and its neuromuscular and myotendinous junctions, R. Mark Grady, Mohammed Akaaboune, Alexander L. Cohen, Margaret M. Maimone, Jeff W. Lichtman, and Joshua R. Sanes

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The risk of a new retinal break or detachment following cataract surgery in eyes that had undergone repair of phakic break or detachment: A hypothesis of a causal relationship to cataract surgery, M. Gilbert Grand

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Risk of hospital-acquired legionnaires' disease in cities using monochloramine versus other water disinfectants, James D. Heffelfinger, Jacob L. Kool, Scott Fridkin, Victoria J. Fraser, Jeffrey Hageman, Jospeh Carpenter, and Cynthia G. Whitney

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Differential requirement for the nonhelical tailpiece and the C terminus of the myosin rod in Caenorhabditis elegans muscle, Pamela E. Hoppe, Rebecca C. Andrews, and Payal D. Parikh

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PCAP: A Whole-Genome Assembly Program, Xiaoqiu Huang, Jianmin Wang, Srinivas Aluru, Shiaw-Pyng Yang, and LaDeana Hillier

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T-cadherin-mediated cell growth regulation involves G2 phase arrest and requires p21(CIP1/WAF1) expression, Zhi-yong Huang, YanLi Wu, Nicole Hedrick, and David H. Gutmann

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Nephrin and CD2AP associate with phosphoinositide 3-OH kinase and stimulate AKT-dependent signaling, Tobias B. Huber, Bjorn Hartleben, Jeong Kim, Miriam Schmidts, Bernhard Schermer, Alexander Keil, Lotti Egger, Rachel L. Lecha, Christoph Borner, Hermann Pavenstadt, Andrey S. Shaw, Gerd Walz, and Thomas Benzing

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Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain, Kirby D. Johnson, Jeffrey A. Grass, Changwon Park, Hogune Im, Kyunghee Choi, and Emery H. Bresnick

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Stability of repetitive-sequence PCR patterns with respect to culture age and subculture frequency, Hyunseok Peter Kang and W. Michael Dunne

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Eval: A software package for analysis of genome annotations, Evan Keibler and Michael R. Brent

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Cluster of type IV secretion genes in Helicobacter pylori's plasticity zone, Dangeruta Kersulyte, Billie Velapatiño, Asish K. Mukhopadhyay, Lizbeth Cahuayme, Alejandro Bussalleu, Juan Combe, Robert H. Gilman, and Douglas E. Berg

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Mesangial cells organize the glomerular capillaries by adhering to the G domain of laminin alpha5 in the glomerular basement membrane, Yamato Kikkawa, Ismo Virtanen, and Jeffrey H. Miner

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Specificity and regulation of DNA binding by the yeast glucose transporter gene repressor Rgt1, Jeong-Ho Kim, Jeffrey Polish, and Mark Johnston

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RSEARCH: Finding homologs of single structured RNA sequences, Robert J. Klein and Sean R. Eddy

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Toll-like receptor-dependent production of IL-12p40 causes chronic enterocolitis in myeloid cell-specific Stat3-deficient mice, Masaya Kobayashi, Mi-Na Kweon, Hirotaka Kuwata, Robert D. Schreiber, Hiroshi Kiyono, Kiyoshi Takeda, and Shizuo Akira

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Interferon-producing cells fail to induce proliferation of naive T cells but can promote expansion and T helper 1 differentiation of antigen-experienced unpolarized T cells, Anne Krug, Ravi Veeraswamy, Andrew Pekosz, Osami Kanagawa, Emil R. Unanue, Marco Colonna, and Marina Cella

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Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae, Joseph Landry, Ann Sutton, Tina Hesman, Jinrong Min, Rui-Ming Xu, Mark Johnston, and Rolf Sternglanz

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Antiadhesive role of apical decay-accelerating factor (CD55) in human neutrophil transmigration across mucosal epithelia, Donald W. Lawrence, Walter J. Bruyninckx, Nancy A. Louis, Douglas M. Lublin, Gregory L. Stahl, Charles A. Parkos, and Sean P. Colgan

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The role of the lissencephaly protein Pac1 during nuclear migration in budding yeast, Wei-Lih Lee, Jessica R. Oberle, and John A. Cooper

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A high performance test of differential gene expression for oligonucleotide arrays, William J. Lemon, Sandya Liyanarachchi, and Ming You

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Predominance of Ehrlichia ewingii in Missouri dogs, Allison M. Liddell, Steven L. Stockham, Michael A. Scott, John W. Summer, Christopher D. Paddock, Monique Gaudreault-Keener, Max Q. Arens, and Gregory A. Storch

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Denaturing high-performance liquid chromatography for detecting and typing genital Human Papillomavirus, Jianduan Li, Daniela S. Gerhard, Zhengyan Zhang, Phillis C. Huettner, Jason Wright, Loan Nguyen, Danielle Lu, and Janet S. Rader

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Reduction of a dislocation of the hip due to developmental dysplasia: Implications for the need for future surgery, Scott J. Luhmann, George S. Bassett, J. Eric Gordon, Mario Schootman, and Perry L. Schoenecker

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Multimeric threading-based prediction of protein–protein interactions on a genomic scale: Application to the Saccharomyces cerevisiae proteome, Long Lu, Adrian K. Arakaki, Hui Lu, and Jeffrey Skolnick

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Trigger factor-mediated prolyl isomerization influences maturation of the Streptococcus pyogenes cysteine protease, William R. Lyon and Michael G. Caparon

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Galactokinase gene mutations and age-related cataract. Lack of association in an Italian population, Giovanni Maraini, J. Fielding Hejtmancik, Alan Shiels, Donna S. Mackay, Raffaella Aldigeri, Xiao D. Jiao, Sally L. Williams, Robert D. Sperduto, and George Reed

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Novel p27(kip1) C-terminal scatter domain mediates Rac-dependent cell migration independent of cell cycle arrest functions, Sandra S. McAllister, Michelle Becker-Hapak, Giuseppe Pintucci, Michele Pagano, and Steven F. Dowdy

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Analysis and functional classification of transcripts from the nematode Meloidogyne incognita, James P. McCarter, Makedonka Dautova Mitreva, John Martin, Mike Dante, Todd Wylie, Uma Rao, Deana Pape, Yvette Bowers, Brenda Theising, Claire V. Murphy, Andrew P. Kloek, Brandi J. Chiapelli, Sandra W. Clifton, David McK Bird, and Robert H. Waterston

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Immune-deficient mouse models for analysis of human stem cells, Todd E. Meyerrose, Phillip Herrbrich, David A. Hess, and Jan A. Nolta

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Efficient high-throughput resequencing of genomic DNA, Raymond D. Miller, Shenghui Duan, Elizabeth G. Lovins, Ellen F. Kloss, and Pui-Yan Kwok

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Targeted chemical disruption of clathrin function in living cells, Howard S. Moskowitz, John Heuser, Timothy E. McGraw, and Timothy A. Ryan

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Effect of Achilles tendon lengthening on neuropathic plantar ulcers: A randomized clinical trial, Michael J. Mueller, David R. Sinacore, Mary Kent Hastings, Michael J. Strube, and Jeffrey E. Johnson

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The fdxA ferredoxin gene can down-regulate frxA nitroreductase gene expression and is essential in many strains of Helicobacter pylori, Asish K. Mukhopadhyay, Jin-Yong Jeong, Daiva Dailidiene, Paul S. Hoffman, and Douglas E. Berg

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Accelerated fat absorption in intestinal alkaline phosphatase knockout mice, Sonoko Narisawa, Lei Huang, Arata Iwasaki, Hideaki Hasegawa, David H. Alpers, and Jose Luis Millan

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Role of RopB in growth phase expression of the SpeB cysteine protease of Streptococcus pyogenes, Melody N. Neely, William R. Lyon, Donna L. Runft, and Michael Caparon

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Human intestinal epithelial and smooth muscle cells are potent producers of IL-6, Edmond K. Ng, Ninder Panesar, Walter E. Longo, Marc J. Shapiro, Donald L. Kaminski, Kym C. Tolman, and John E. Mazuski

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Lens connexins α3Cx46 and α8Cx50 interact with zonula occludens protein-1 (ZO-1), Peter A. Nielsen, Amos Baruch, Valery I. Shestopalov, Ben N.G. Giepmans, Irene Dunia, E. Lucio Benedetti, and Nalin M. Kumar

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The IκB function of NF-κB2 p100 controls stimulated osteoclastogenesis, Deborah Veis Novack, Li Yin, Amanda Hagen-Stapleton, Robert D. Schreiber, David V. Goeddel, F. Patrick Ross, and Steven L. Teitelbaum

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Inhibition of stress-inducible kinase pathways by tumorigenic mutant p53, Yoichi Ohiro, Anny Usheva, Shinichiro Kobayashi, Shannon L. Duffy, Regan Nantz, David Gius, and Nobuo Horikoshi

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Invasive disease due to nontypeable Haemophilus influenzae among children in Arkansas, Joshua M. O'Neill, Joseph W. St. Geme III, David Cutter, Elisabeth E. Adderson, Juliana Anyanwu, Richard F. Jacobs, and Gordon E. Schutze

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Antifungal susceptibility survey of 2,000 bloodstream Candida isolates in the United States, Luis Ostrosky-Zeichner, John H. Rex, Peter G. Pappas, Richard J. Hamill, Robert A. Larsen, Harold W. Horowitz, William G. Powderly, Newton Hyslop, Carol A. Kauffman, John Cleary, Julie E. Mangino, and Jeannette Lee

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Three-dimensional organization of basal bodies from wild-type and δ-tubulin deletion strains of Chlamydomonas reinhardtii, Eileen T. O'Toole, Thomas H. Giddings, J. Richard McIntosh, and Susan K. Dutcher

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Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database, Deana Pape, John Martin, Todd Wylie, Mike Dante, Robert H. Waterston, Sandra W. Clifton, and et al

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Ligand-induced closure of inward rectifier Kir6.2 channels traps spermine in the pore, L. Revell Phillips and Colin G. Nichols

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DNA-level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh, Motiur Rahman, Asish K. Mukhopadhyay, Shamsun Nahar, Simanti Datta, Milan Mashhud Ahmad, Safique Sarker, Ibna M. Masud, Lars Engstrand, M. John Albert, G. Balakrish Nair, and Douglas E. Berg

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Involvement of fatty acid pathways and cortical interaction of the pronuclear complex in Caenorhabditis elegans embryonic polarity, Chad A. Rappleye, Akiko Tagawa, Nathalie Le Bot, Julie Ahringer, and Raffi V. Aroian

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Thoracoscopic intradiscal spine fusion using a minimally invasive gene-therapy technique, K. Daniel Riew, Jueren Lou, Neill M. Wright, Su-Li Cheng, Kyongtae T. Bae, and Louis V. Avioli

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Prevalence and distribution of adhesins in invasive non-type b encapsulated Haemophilus influenzae, Carina A. Rodriguez, Vasanthi Avadhanula, Amy Buscher, Arnold L. Smith, Joseph W. St. Geme III, and Elisabeth E. Adderson

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Retarded outer segment development in TrkB knockout mouse retina organ culture, Baerbel Rohrer and Judith Mosinger Ogilvie

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Genetic analysis of maximum cigarette-use phenotypes, Nancy L. Saccone, Rosalind J. Neuman, Scott F. Saccone, and John P. Rice

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CD14- and toll-like receptor-dependent activation of bladder epithelial cells by lipopolysaccharide and type 1 piliated Escherichia coli, Joel D. Schilling, Steven M. Martin, David A. Hunstad, Kunal P. Patel, Matthew A. Mulvey, Sheryl S. Justice, Robin G. Lorenz, and Scott J. Hultgren

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Human heterochromatin protein 1 isoforms HP1(Hsα) and HP1(Hsβ) interfere with hTERT-telomere interactions and correlate with changes in cell growth and response to ionizing radiation, Girdhar G. Sharma, Kyu-kye Hwang, Raj K. Pandita, Arun Gupta, Sonu Dhar, Julie Parenteau, Manjula Agarwal, Howard J. Worman, Raymund J. Wellinger, and Tej K. Pandita

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The genome sequence of caenorhabditis briggsae: a platform for comparative genomics, Lincoln D. Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R. Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'Eustachio, David H. Fitch, Lucinda A. Fulton, Robert E. Fulton, Sam Griffiths-Jones, Todd W. Harris, LaDeana W. Hillier, Ravi Kamath, Patricia E. Kuwabara, Elaine R. Mardis, Marco A. Marra, Tracie L. Miner, Patrick Minx, James C. Mullikin, Robert W. Plumb, Jane Rogers, Jacqueline E. Schein, Marc Sohrmann, John Spieth, Jason E. Stajich, Chaochun Wei, David Willey, Richard Wislon, Richard Durbin, and Robert H. Waterson

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Quantitative evaluation of inflammatory and immune responses in the early stages of chronic Helicobacter pylori infection, Reinhard K. Straubinger, Andrea Greiter, Sean P. McDonough, Alexander Gerold, Eugenio Scanziani, Sabina Soldati, Daiva Dailidiene, Giedrius Dailide, Douglas E. Berg, and Kenneth W. Simpson

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Adhesive and lateral E-cadherin dimers are mediated by the same interface, Regina B. Troyanovsky, Eugene Sokolov, and Sergey M. Troyanovsky

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Modulation of Rab5 and Rab7 recruitment to phagosomes by phosphatidylinositol 3-kinase, Otilia V. Vieira, Cecilia Bucci, Rene E. Harrison, William S. Trimble, Letizia Lanzetti, Jean Gruenberg, Alan Schreiber, Philip D. Stahl, and Sergio Gernstein

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Viral discovery and sequence recovery using dna microarrays, David Wang, Anatoly Urisman, Yu-Tsueng Liu, Michael Springer, Thomas G. Ksiazek, Dean D. Erdman, Elaine R. Mardis, Matthew Hickenbotham, Vincent Magrini, James Eldred, J P. Latreille, Richard K. Wilson, Don Ganem, and Joseph L. DeRisi

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The epidemiology of vancomycin-resistant Enterococcus colonization in a medical intensive care unit, David K. Warren, Marin H. Kollef, Sondra M. Seiler, Scott K. Fridkin, and Victoria J. Fraser

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Actin filament polymerization regulates gliding motility by apicomplexan parasites, D. M. Wetzel, S. Håkansson, K. Hu, D. Roos, and L. D. Sibley

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Role of nonhost environments in the lifestyles of Salmonella and Escherichia coli, Mollie D. Winfield and Eduardo A. Groisman

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Kinetic FP-TDI assay for SNP allele frequency determination, Ming Xiao, Sherif Medhat Latif, and Pui-Yan Kwok

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Inactivation of BK channels by the NH2 terminus of the beta2 auxiliary subunit: An essential role of a terminal peptide segment of three hydrophobic residues, Xiao-Ming Xia, J. P. Ding, and Christopher J. Lingle

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A comprehensive analysis of the expression of crystallins in mouse retina, Jinghua Xi, Rafal Farjo, Shigeo Yoshida, Timothy S. Kern, Anand Swaroop, and Usha P. Andley

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A novel domain within the DEAD-box protein DP103 is essential for transcriptional repression and helicase activity, Xiaomei Yan, Jean-Francois Mouillet, Qinglin Ou, and Yoel Sadovsky

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Tumor necrosis factor alpha is a key mediator of gut inflammation seen in amebic colitis in human intestine in the SCID mouse-human intestinal xenograft model of disease, Zhi Zhang, Sajan Mahajan, Xiaochung Zhang, and Samuel L. Stanley Jr.

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What's new in spine surgery, Jack E. Zigler, Paul A. Anderson, Scott D. Boden, Keith H. Bridwell, and Alexander R. Vaccaro

Submissions from 2002

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Dipeptidyl peptidase I activates neutrophil-derived serine proteases and regulates the development of acute experimental arthritis, April M. Adkinson, Sofia Z. Raptis, Diane G. Kelley, and Christine T.N. Pham

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Astrocyte-specific inactivation of the neurofibromatosis 1 gene (NF1) is insufficient for astrocytoma formation, Michaela Livia Bajenaru, Yuan Zhu, Nicole M. Hedrick, Jessica Donahoe, Luis F. Parada, and David H. Gutmann

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Convergence of TOR-nitrogen and Snf1-glucose signaling pathways onto Gln3, Paula G. Bertram, Jae H. Choi, John Carvalho, Ting-Fung Chan, Wandong Ai, and X. F. Steven Zheng

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Clinical decision making based on data from GDx: One year observations, James C. Bobrow

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Flexor tendon repair and rehabilitation: State of the art in 2002, Martin I. Boyer, James W. Strickland, Drew R. Engles, Kavi Sachar, and Fraser J. Leversedge

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The spectrum of complications of immunosuppression: Is the time right for hand transplantation?, Michael J. Brenner, Thomas H. Tung, John N. Jensen, and Susan E. Mackinnon

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Cyclosporin A inhibits caspase-independent death of NGF-deprived sympathetic neurons: a potential role for mitochondrial permeability transition., Louis K. Chang and Eugene M. Johnson

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Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks, Barak A. Cohen, Yitzhak Pilpel, Robi D. Mitra, and George M. Church

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Structural and functional determinants of conserved lipid interaction domains of inward rectifying Kir6.2 channels, Catherine A. Cukras, Iana Jeliazkova, and Colin G. Nichols

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The role of NH2-terminal positive charges in the activity of inward rectifier KATP channels, Catherine A. Cukras, Iana Jeliazkova, and Colin G. Nichols

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Bacterial infectious disease control by vaccine development, Roy Curtiss III

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The challenge of target sequence specificity in C→U RNA editing, Nicholas O. Davidson

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Surgical correction of the snapping iliopsoas tendon in adolescents, Matthew B. Dobbs, J. Eric Gordon, Scott J. Luhmann, Deborah A. Szymanski, and Perry L. Schoenecker

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Prevalance of neural axis abnormalities in patients with infantile idiopathic scoliosis, Matthew B. Dobbs, Lawrence G. Lenke, Deborah A. Szymanski, Jose A. Morcuende, Stuart L. Weinstein, Keith H. Bridwell, and Paul D. Sponseller

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Bacterial adhesion: Seen any good biofilms lately?, W. Michael Dunne Jr.

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ε-tubulin Is an essential component of the centriole, Susan K. Dutcher, Naomi S. Morrissette, Andrea M. Preble, Craig Rackley, and John Stanga

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T helper subset development: roles of instruction, selection, and transcription, J. David Farrar, Helene Asnagli, and Kenneth M. Murphy

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The cardiac phenotype induced by PPARα overexpression mimics that caused by diabetes mellitus, Brian N. Finck, John J. Lehman, Teresa C. Leone, Michael J. Welch, Michael J. Bennett, Attila Kovacs, Xianlin Han, Richard W. Gross, Ray Kozak, Gary D. Lopaschuk, and Daniel P. Kelly

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The Haemophilus influenzae Hap autotransporter binds to fibronectin, laminin, and collagen IV, Doran L. Fink, Bruce A. Green, and Joseph W. St. Geme III

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Myeloperoxidase produces nitrating oxidants in vivo, Joseph P. Gaut, Jaeman Byun, Hung D. Tran, Wendy M. Lauber, James A. Carroll, Richard S. Hotchkiss, Abderrazzaq Belaaouaj, and Jay W. Heinecke

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Alkaline phosphatase reporter transposon for identification of genes encoding secreted proteins in gram-positive microorganisms, Carmela M. Gibson and Michael G. Caparon

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Expression, autoregulation, and DNA binding properties of the Mycobacterium tuberculosis TrcR response regulator, Shelley E. Haydel, William H. Benjamin Jr., Nancy E. Dunlap, and Josephine E. Clark-Curtiss

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Heparin cofactor II inhibits arterial thrombosis after endothelial injury, Li He, Cristina P. Vicente, Randal J. Westrick, Daniel T. Eitzman, and Douglas M. Tollefsen

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Immune responses to recombinant pneumococcal PspA antigen delivered by live attenuated Salmonella enterica serovar typhimurium vaccine, Ho Young Kang, Jay Srinivasan, and Roy Curtiss III

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Transposable element ISHp608 of Helicobacter pylori: Nonrandom geographic distribution, functional organization, and insertion specificity, Dangeruta Kersulyte, Billie Velapatiño, Giedrius Dailide, Asish K. Mukhopadhyay, Yoshiyuki Ito, Lizbeth Cahuayme, Alan J. Parkinson, Robert H. Gilman, and Douglas E. Berg

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Dynamic interplay between adhesive and lateral E-cadherin dimers, Jorg Klingelhofer, Oscar Y. Laur, Regina B. Troyanovsky, and Sergey M. Troyanovsky

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Overlapping and enzyme-specific contributions of matrix metalloproteinases-9 and -12 in IL-13-induced inflammation and remodeling, Sophie Lanone, Tao Zheng, Zhou Zhu, Wei Liu, Chun Geun Lee, Bing Ma, Qingsheng Chen, Robert J. Homer, Jingming Wang, Lesley A. Rabach, Morgan E. Rabach, J. Michael Shipley, Steven D. Shapiro, Robert M. Senior, and Jack A. Elias

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CD46 is phosphorylated at tyrosine 354 upon infection of epithelial cells by Neisseria gonorrhoeae, Shaun W. Lee, Robert A. Bonnah, Dustin L. Higashi, John P. Atkinson, Sharon L. Milgram, and Magdalene So

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Setting the stage for molecular dissection of the regulatory components of BK channels, Christopher J. Lingle

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1,25-Dihydroxyvitamin D3 is a negative endocrine regulator of the renin-angiotensin system, Yan Chun Li, Juan Kong, Minjie Wei, Zhou-Feng Chen, Shu Q. Liu, and Li-Ping Cao