The Open Access Publications collection contains peer-reviewed articles authored by Washington University School of Medicine faculty that have been published in open access journals or authorized by the publishers for open access availability. Open access works are generally defined as being publicly available online and free of most licensing and copyright restrictions. The Bernard Becker Medical Library maintains this collection in support of Washington University’s commitment to the principles of open access publishing and making the scholarly work and research results of our faculty as widely and easily available as possible.

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Submissions from 2016

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North Carolina macular dystrophy (MCDR1) caused by a novel tandem duplication of the PRDM13 gene, Sara J. Bowne, Lori S. Sullivan, Dianna K. Wheaton, Kirsten G. Locke, Kaylie D. Jones, Daniel C. Koboldt, Robert S. Fulton, Richard K. Wilson, Susan H. Blanton, David G. Birch, and Stephen P. Daiger

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Establishing the feasibility of the dosimetric compliance criteria of RTOG 1308: Phase III randomized trial comparing overall survival after photon versus proton radiochemotherapy for inoperable stage II-IIIB NSCLC, Jeffrey D. Bradley and et al

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Data publication with the structural biology data grid supports live analysis, Tom J. Brett, Niraj H. Tolia, and et al

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Distinct transcriptional programs control cross-priming in classical and monocyte-derived dendritic cells, Carlos G. Briseno, Malay Haldar, Nicole M. Kretzer, Xiaodi Wu, Derek J. Theisen, Wumesh KC, Vivek Durai, Gary E. Grajales-Reyes, Arifumi Iwata, Prachi Bagadia, Theresa L. Murphy, and Kenneth M. Murphy

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Regulation of monocyte cell fate by blood vessels mediated by Notch signalling, Carlos G. Briseño, Kenneth M. Murphy, and et al

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Nonalcoholic fatty liver disease: Pros and cons of histologic systems of evaluation, Elizabeth M. Brunt

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Lipedema: A relatively common disease with extremely common misconceptions, Donald W. Buck II and Karen L. Herbst

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Accuracy of coverage survey recall following an integrated mass drug administration for lymphatic filariasis, schistosomiasis, and soil-transmitted helminthiasis, Philip J. Budge, Edmond Sognikin, Amanda Akosa, Els M. Mathieu, and Michael Deming

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The network for intracortical communication in mouse visual cortex, Andreas Burkhalter

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Topical decolonization does not eradicate the skin microbiota of community-dwelling or hospitalized adults, Carey-Ann D. Burnham, Patrick G. Hogan, Meghan A. Wallace, Elena Deych, William Shannon, David K. Warren, and Stephanie A. Fritz

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Impact of time to appropriate therapy on mortality in patients with vancomycin-intermediate Staphylococcus aureus infection, Jason P. Burnham, Carey-Ann D. Burnham, David K. Warren, and Marin H. Kollef

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Deregulated lipid sensing by intestinal CD36 in diet-induced hyperinsulinemic obese mouse model, Marjorie Buttet, Helene Poirier, Veronique Traynard, Kevin Gaire, Thi Thu Trang Tran, Sinju Sundaresan, Philippe Besnard, Nada A. Abumrad, and Isabelle Niot

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Neuromodulation of the failing heart: Lost in translation?, Mirnela Byku and Douglas L. Mann

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Hypoglycemia during moderate intensity exercise reduces counterregulatory responses to subsequent hypoglycemia, W. Todd Cade, Nadia Khoury, Suzanne Nelson, Angela Shackleford, Katherine Semenkovich, Melissa J. Krauss, and Ana Maria Arbelaez

Hypoglycemia during moderate intensity exercise reduces counterregulatory responses to subsequent hypoglycemia, W. Todd Cade, Nadia Khoury, Suzanne Nelson, Angela Shackleford, Katherine Semenkovich, Melissa J. Krauss, and Ana Maria Arbelaez

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Maternal glucose and fatty acid kinetics and infant birth weight in obese women with type 2 diabetes, W. Todd Cade, Rachel A. Tinius, Dominic N. Reeds, Bruce W. Patterson, and Alison G. Cahill

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Th17 cells are more protective than Th1 cells against the intracellular parasite Trypanosoma cruzi, Catherine W. Cai, Jennifer R. Blase, Xiuli Zhang, Christopher S. Eickhoff, and Daniel F. Hoft

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Genome-wide analysis of genetic correlation in dementia with Lewy bodies, Parkinson's and Alzheimer's diseases, Nigel J. Cairns and et al

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The first NINDS/NIBIB consensus meeting to define neuropathological criteria for the diagnosis of chronic traumatic encephalopathy, Nigel J. Cairns and et al

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The effect of dopaminergic medication on beat-based auditory timing in Parkinson’s disease, Daniel J. Cameron, Kristen A. Pickett, Gammon M. Earhart, and Jessica A. Grahn

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ATG16L1 governs placental infection risk and preterm birth in mice and women, Bin Cao, Colin Macones, and Indira U. Mysorekar

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Divergent viral presentation among human tumors and adjacent normal tissues, Song Cao, Michael C. Wendl, Matthew A. Wyczalkowski, Kristine Wylie, Kai Ye, Reyka Jayasinghe, Mingchao Xie, Song Wu, Beifang Niu, Robert Grubb III, Kimberly J. Johnson, Hiram Gay, Ken Chen, Janet S. Rader, John F. Dipersio, Feng Chen, and Li Ding

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MiR-15a/16 regulates apoptosis of lung epithelial cells after oxidative stress, Yong Cao, Duo Zhang, Hyung-Geun Moon, Heedoo Lee, Jeffrey A. Haspel, Kebin Hu, Lixin Xie, and Yang Jin

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RNA regulation of lipotoxicity and metabolic stress, George Caputa and Jean E. Schaffer

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Interleukin-17A contributes to the control of Streptococcus pyogenes colonization and inflammation of the female genital tract, Alison J. Carey, Jason B. Weinberg, Suzanne R. Dawid, Carola Venturini, Alfred K. Lam, Victor Nizet, Michael G. Caparon, Mark J. Walker, and Michael E. Watson

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Associations between polygenic risk for psychiatric disorders and substance involvement, Caitlin E. Carey, Arpana Agrawal, Kathleen K. Bucholz, Sarah M. Hartz, MIchael T. Lynskey, Elliot C. Nelson, Laura J. Bierut, and Ryan Bogdan

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Controlling nosocomial transmission of drug-resistant pathogens at different endemic stages in a resource-limited setting, Abigail L. Carlson, Nattapol Pruetpongpun, Aubonphan Buppajarntham, and Anucha Apisarnthanarak

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Association of functional impairments and co-morbid conditions with driving performance among cognitively normal older adults, David B. Carr, Peggy P. Barco, Ganesh M. Babulal, Sarah H. Stout, Anne M. Johnson, Chengjie Xiong, John C. Morris, and Catherine M. Roe

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Encouraging antibiotic development and endorsing conservation: Tandem approaches to our declining antibiotic reserves, Kevin A. Cassady, Jason G. Newland, and Lisa Saiman

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A distal to proximal gradient of human choroid plexus development, with antagonistic expression of Glut1 and AQP1 in mature cells vs. calbindin and PCNA in proliferative cells, Leandro Castaneyra-Ruiz, Ibrahim Gonzalez-Marrero, Luis G. Hernandez-Abad, Emilia M. Carmona-Calero, Gundela Meyer, and Agustin Castaneyra-Perdomo

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Impact of age and sex on outcomes and hospital cost of acute asthma in the United States, 2011-2012, Mario Castro and et al.

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Longitudinal evaluation of cognitive functioning in young children with type 1 diabetes over 18 months, M. Allison Cato, Nelly Mauras, Paul Mazaika, Craig Kollman, Peiyao Cheng, Tandy Aye, Jodie Ambrosino, Roy W. Beck, Katrina J. Ruedy, Allan L. Reiss, Michael Tansey, Neil H. White, and Tamara Hershey

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Striatal activity is associated with deficits of cognitive control and aberrant salience for patients with schizophrenia, Alan E. Ceaser and Deanna M. Barch

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The NADase-negative variant of the Streptococcus pyogenes toxin NAD+ glycohydrolase induces JNK1-mediated programmed cellular necrosis, Sukantha Chandrasekaran and Michael G. Caparon

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A critical review of perfluorooctanoate and perfluorooctanesulfonate exposure and immunological health conditions in humans, Ellen T. Chang, Hans-Olov Adami, Paolo Boffetta, H. James Wedner, and Jack S. Mandel

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Voxel-based morphometry in individuals at genetic high risk for schizophrenia and patients with schizophrenia during their first episode of psychosis, Miao Chang, Fay Y. Womer, Chuan Bai, Qian Zhou, Shengnan Wei, Xiaowei Jiang, Haiyang Geng, Yifang Zhou, Yanqing Tang, and Fei Wang

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Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq, Yiming K. Chang, Yogesh Srivastava, Caizhen Hu, Adam Joyce, Xiaoxiao Yang, Zheng Zuo, James J. Havranek, Gary D. Stormo, and Ralf Jauch

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Derivation of two critical appraisal scores for trainees to evaluate online educational resources: A METRIQ study, Teresa M. Chan, Brent Thoma, Keeth Krishnan, Michelle Lin, Christopher R. Carpenter, Matt Astin, and Kulamakan Kulasegaram

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Advances in cholangiocarcinoma research: Report from the third Cholangiocarcinoma Foundation Annual Conference, William Chapman and et al

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Long-term effects of robotic hippotherapy on dynamic postural stability in cerebral palsy, Young Joo Cha, Megan Stanley, Tim Shurtleff, and Joshua S.H. You

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Genetic risk can be decreased: Quitting smoking decreases and delays lung cancer for smokers with high and low CHRNA5 risk genotypes — A meta-analysis, Li-Shiun Chen, Amy Horton, Robert Culverhouse, Sarah Hartz, Nancy Saccone, Laura J. Bierut, and et al

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Evidence for differential glycosylation of trophoblast cell types, Qiushi Chen, Poh-Choo Pang, Marie E. Cohen, Mark S. Longtime, Danny J. Schust, Stuart M. Haslam, Sandra M. Blois, Anne Dell, and Gary F. Clark

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Patient-reported outcomes of brentuximab vedotin in Hodgkin lymphoma and anaplastic large-cell lymphoma, Robert Chen, Suzanne Allibone, Nancy L. Bartlett, Pauline Brice, Andy Chen, Katrina Pose, Lynn Rich, Vijay Bonthapally, Phillip M. Garfin, and Michelle Fanale

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Automated quantification of cerebral edema following hemispheric infarction: Application of a machine-learning algorithm to evaluate CSF shifts on serial head CTs, Yasheng Chen, Rajat Dhar, Laura Heitsch, Andria Ford, Israel Fernandez-Cadenas, Caty Carrera, Joan Montaner, Weili Lin, Dinggang Shen, Hongyu An, and Jin-Moo Lee

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ABCG1 maintains high-grade glioma survival in vitro and in vivo, Yi-Hsien Chen, Patrick J. Cimino, Jingqin Luo, Sonika Dahiya, and David H. Gutmann

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Measurement of circulating filarial antigen levels in human blood with a point-of-care test strip and a portable spectrodensitometer, Cédric B. Chesnais, Johnny Vlaminck, Billy Kunyu-Shako, Sébastien D. Pion, Naomi-Pitchouna Awaca-Uvon, Gary J. Weil, Dieudonné Mumba, and Michel Boussinesq

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A diet mimicking fasting promotes regeneration and reduces autoimmunity and multiple sclerosis symptoms, In Young Choi, Laura Piccio, Patra Childress, Bryan Bollman, Arko Ghosh, Sebastian Brandhorst, Jorge Suarez, Andreas Michalsen, Anne H. Cross, Todd E. Morgan, Min Wei, Friedemann Paul, Markus Bock, and Valter D. Longo

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Parallel analysis of ribonucleotide-dependent deletions produced by yeast Top1 in vitro and in vivo, Jang-Eun Cho, Shar-yin N. Huang, Peter M. Burgers, Stewart Shuman, Yves Pommier, and Sue Jinks-Robertson

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Genome-wide polygenic scores for age at onset of alcohol dependence and association with alcohol-related measures, Y-L Chou, P A F. Madden, L J. Bierut, A C. Heath, K K. Bucholz, and A Agrawal

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Hormonal responses to cholinergic input are different in humans with and without type 2 diabetes mellitus, Sara Chowdhury, Songyan Wang, Jundit Dunai, Rachel Kilpatrick, Lauren Z. Oestricker, Michael J. Wallendorf, Bruce W. Patterson, Dominic N. Reeds, and Burton M. Wice

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Rectal budesonide and mesalamine formulations in active ulcerative proctosigmoiditis: efficacy, tolerance, and treatment approach, George P. Christophi, Arvind Rengarajan, and Matthew A. Ciorba

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The effect of chloroquine on immune activation and interferon signatures associated with HIV-1, David Clifford and et al

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Using propensity score methods to assess causal effects of mothers' dieting behavior on daughters' early dieting behavior, Donna L. Coffman, Katherine N. Balantekin, and Jennifer S. Savage

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Nurses' Health Study: Demonstrating the impact of research, and adapting new measures and approaches to increase relevance and effect of cohort studies, Graham A. Colditz

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The myocardial and coronary histopathology and pathogenesis of hypoplastic left heart syndrome, Charles R. Cole and Pirooz Eghtesady

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Inflammatory monocytes and NK cells play a crucial role in DNAM-1-dependent control of cytomegalovirus infection, Marco Colonna and et al

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Baseline results of the NeuroNEXT spinal muscular atrophy infant biomarker study, Anne M. Connolly and et al

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Breast reconstruction after mastectomy at a comprehensive cancer center, Shahnjayla K. Connors, Melody S. Goodman, Terence Myckatyn, Julie Margenthaler, and Sarah Gehlert

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Metabolic requirements of Escherichia coli in intracellular bacterial communities during urinary tract infection pathogenesis, Matt S. Conover, Maria Hadjifrangiskou, Joseph J. Palermo, Michael E. Hibbing, Karen W. Dodson, and Scott J. Hultgren

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Child maltreatment prevention and the scope of child and adolescent psychiatry, John Constantino

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The action of discoidin domain receptor 2 in basal tumor cells and stromal cancer-associated fibroblasts Is critical for breast cancer metastasis, Callie A.S. Corsa, Audrey Brenot, Whitney R. Grither, Samantha Van Hove Washington University School of Medicine in St. Louis, Andrew J. Loza, Kun Zhang, Suzanne M. Ponik, Yuming Liu, David G. DeNardo, Kevin W. Eliceiri, Patricia J. Keely, and Gregory D. Longmore

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Urb-RIP - An adaptable and efficient approach for immunoprecipitation of RNAs and associated RNAs/proteins, Kyle A. Cottrell and Sergej Djuranovic

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Transcriptome analysis of chemically-induced sensory neuron ablation in zebrafish, Jane A. Cox, Bo Zhang, Holly M. Pope, and Mark M. Voight

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Trajectories of depressive symptoms after hip fracture, P. Cristancho, E. J. Lenze, M. S. Avidan, and K. S. Rawson

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Dynorphin controls the gain of an amygdalar anxiety circuit, NIcole A. Crowley, Daniel W. Bloodgood, J. Andrew Hardaway, Alexis M. Kendra, Jordan G. McCall, Ream Al-Hasani, Nora M. McCall, Waylin Yu, Zachary L. Schools, Michael J. Krashes, Bradford B. Lowell, Jennifer L. Whistler, Michael R. Bruchas, and Thomas L. Kash

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Influence of coding variability in APP-Aβ metabolism genes in sporadic Alzheimer’s disease, Carlos Cruchaga and et al.

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Isolated oculomotor nerve palsy resulting from acute traumatic tentorial subdural hematoma, Victoria Cui and Timur Kouliev

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Drug development in Alzheimer’s disease: The path to 2025, Jeffrey Cummings, Paul S. Aisen, Bruno DuBois, Lutz Frölich, Clifford R. Jack Jr., Roy W. Jones, John C. Morris, Joel Raskin, Sherie A. Dowsett, and Philip Scheltens

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Innovative solutions to sticky situations: Antiadhesive strategies for treating bacterial infections, Zachary T. Cusumano, Roger D. Klein, and Scott J. Hultgren

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Approach to atherosclerotic renovascular disease: 2016, Reem Daloul and Aubrey R. Morrison

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Dickkopf-related protein 1 (Dkk1) regulates the accumulation and function of myeloid derived suppressor cells in cancer, Lucia D'Amico, Sahil Mahajan, Aude-Helene Capietto, Zhengfeng Yang, Ali Zamani, Biancamaria Ricci, David B. Bumpass, Melissa Meyer, Xinming Su, Andrea Wang-Gillam, Katherine Weilbaecher, Sheila A. Stewart, David G. DeNardo, and Roberta Faccio

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Complexities of X chromosome inactivation status in female human induced pluripotent stem cells—a brief review and scientific update for autism research, Mary G. Dandulakis, Kesavan Meganathan, Kristen L. Kroll, Azad Bonni, and John N. Constantino

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Open source drug discovery with the Malaria Box compound collection for neglected diseases and beyond, Na Le Dang, Tyler B. Hughes, Donatella Taramelli, and et al.

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Changes in the relative abundance of two Saccharomyces species from oak forests to wine fermentations, Sofia Dashko, Ping Liu, Helena Volk, Lorena Butinar, Jure Piškur, and Justin C. Fay

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Exploring the relationship between eye movements and electrocardiogram interpretation accuracy, Alan Davies, Gavin Brown, Markel Vigo, Simon Harper, Laura Horseman, Bruno Splendiani, Elspeth Hill, and Caroline Jay

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A case study in the history of neurology, Gregory S. Day, David F. Tang-Wai, and Michel C.F. Shamy

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Heritable DNA methylation in CD4+ cells among complex families displays genetic and non-genetic effects, Kenneth Day, Lindsay L. Waite, Amald Alonso, Marguerite R. Irvin, Degui Zhi, Krista S. Thibeault, Stella Aslibekyan, Bertha Hidalgo, Ingrid B. Borecki, Jose M. Ordovas, Donna K. Arnett, Hemant K. Tiwari, and Devin M. Absher

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The two sides of sensory–cognitive interactions: Effects of age, hearing acuity, and working memory span on sentence comprehension, Renee DeCaro, Jonathan E. Peelle, Murray Grossman, and Arthur Wingfield

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Genome sequences of nine gram-negative vaginal bacterial isolates, Grace E. Deitzler, Maria J. Ruiz, Wendy Lu, Cory Weimer, SoEun Park, Lloyd S. Robinson, Kymberlie Hallsworth-Pepin, Aye Wollam, Makedonka Mitreva, Warren G. Lewis, and Amanda L. Lewis

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Genome sequences of 14 Firmicutes strains isolated from the human vagina, Grace E. Deitzler, Maria J. Ruiz, Cory Weimer, SoEun Park, Lloyd Robinson, Kymberlie Hallsworth-Pepin, Aye Wollam, Makedonka Mitreva, Amanda L. Lewis, and Warren G. Lewis

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Proteomic analysis of the bovine and human ciliary zonule, Alicia De Maria, Phillip A. Wilmarth, Larry L. David, and Steven Bassnett

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Thymic stromal lymphopoietin blocks early stages of breast carcinogenesis, Shadmehr Demehri, Trevor J. Cunningham, Sindhu Manivasagam, Kenneth H. Ngo, Sara Moradi Tuchayi, Rasikia Reddy, Melissa A. Meyers, David G. DeNardo, and Wayne M. Yokoyama

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Chitinase-3-like 1 protein (CHI3L1) locus influences cerebrospinal fluid levels of YKL-40, Yuetiva Deming, Kathleen Black, David Carrell, Yefei Cai, Jorge L. Del-Aguila, Maria Victoria Fernandez, John Budde, ShengMei Ma, Benjamin Saef, Bill Howells, Sarah Bertelsen, Kuan-lin Huang, Courtney L. Sutphen, Rawan Tarawneh, Anne M. Fagan, David M. Holtzman, John C. Morris, Alison M. Goate, Joseph D. Dougherty, and Carlos Cruchaga

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The mechanism of a formaldehyde-sensing transcriptional regulator, Katie J. Denby, Jeffrey Iwig, Claudine Bisson, Jodie Westwood, Matthew D. Rolfe, Svetlana E. Sedelnikova, Khadine Higgins, Michael J. Maroney, Patrick J. Baker, Peter T. Chivers, and Jeffrey Green

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Increased persistent sodium current causes neuronal hyperexcitability in the entorhinal cortex of Fmr1 knockout mice, Pan-Yue Deng and Vitaly A. Klyachko

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Nicotinamide mononucleotide supplementation reverses vascular dysfunction and oxidative stress with aging in mice, Natalie E. de Picciotto, Lindsey B. Gano, Lawrence C. Johnson, Christopher R. Martens, Amy L. Sindler, Kathryn F. Mills, Shin-ichiro Imai, and Douglas R. Seals

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End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data, Alan Derr, Chaoxing Yang, Rapolas Zilionis, Alexey Sergushichev, David M. Blodgett, Sambra Redick, Rita Bortell, Jeremy Luban, David M. Harlan, Sebastian Kadener, Dale L. Greiner, Allon Klein, Maxim N. Artyomov, and Manuel Garber

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Epidemiological and economic burden of Clostridium difficile in the United States: Estimates from a modeling approach, Kamal Desai, Swati B. Gupta, Erik R. Dubberke, Vimalanand S. Prabhu, Chantelle Browne, and T. Christopher Mast

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Quantifying the Twitter influence of third party commercial entities versus healthcare providers in thirteen medical conferences from 2011 – 2013, Tejas Desai, Vibhu Dhingra, Afreen Shariff, Aabid Shariff, Edgar Lerma, Parteek Singla, Swapnil Kachare, Zoheb Syed, Deeba Minhas, Ryan Madanick, and Xiangming Fang

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Progressive elbow pain, Alexis Descatha, Thomas Despreaux, Ryan P. Calfee, Bradley Evanoff, and Olivier Saint-Lary

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From alcohol initiation to tolerance to problems: Discordant twin modeling of a developmental process, Arielle R. Deutsch, Wendy S. Slutske, Michael T. Lynskey, Kathleen K. Bucholz, Pamela A. F. Madden, and Nicholas G. Martin

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Sexual dimorphism in myocardial acylcarnitine and triglyceride metabolism, Sriram Devanathan, Timothy D. Whitehead, Nicole Fettig, Robert J. Gropler, Samuel Nemanich, and Kooresh I. Shoghi

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Academic cross-pollination: The role of disciplinary affiliation in research collaboration, Amar Dhand, Douglas A. Luke, Bobbi J. Carothers, and Bradley A. Evanoff

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Contextual organismality: Beyond pattern to process in the emergence of organisms, Samuel L. Diaz-Munoz, Amy M. Boddy, Gautam Dantas, Christopher M. Waters, and Judith L. Bronstein

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Technical note: Recommendations for a standard procedure to assess cortical bone at the tissue-level in vivo using impact microindentation, A. Diez-Perez, M. L. Bouxsein, E. F. Eriksen, S. Khosla, J. S. Nyman, S. Papapoulos, and S. Y. Tang

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Consumption of caffeinated products and cardiac ectopy, Shalini Dixit, Phyllis K. Stein, Thomas A. Dewland, Jonathan W. Dukes, Eric Vittinghoff, Susan R. Heckbert, and Gregory M. Marcus

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Chemical chaperone TUDCA prevents apoptosis and improves survival during polymicrobial sepsis in mice, Marcel Doerflinger, Jason Glab, Christina Nedeva, Irvin Jose, Ann Lin, Lorraine O’Reilly, Cody Allison, Marc Pellegrini, Richard S. Hotchkiss, and Hamsa Puthalakath

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Investigation of linezolid resistance in staphylococci and enterococci, Christopher D. Doern, Jason Y. Park, Michael Gallegos, Debbie Alspaugh, and Carey-Ann D. Burnham

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Change in angina symptom status after acute myocardial infarction and its association with readmission risk: An analysis of the Translational Research Investigating Underlying Disparities in Acute Myocardial Infarction Patients' Health Status (TRIUMPH) registry, Jacob A. Doll, Fengming Tang, Sharon Cresci, P. Michael Ho, Thomas M. Maddox, John A. Spertus, and Tracy Y. Wang

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Practical considerations for noise power spectra estimation for clinical CT scanners, Steven Dolly, Hsin-Chen Chen, Mark Anastasio, Sasa Mutic, and Hua Li