The Open Access Publications collection contains peer-reviewed articles authored by Washington University School of Medicine faculty that have been published in open access journals or authorized by the publishers for open access availability. Open access works are generally defined as being publicly available online and free of most licensing and copyright restrictions. The Bernard Becker Medical Library maintains this collection in support of Washington University’s commitment to the principles of open access publishing and making the scholarly work and research results of our faculty as widely and easily available as possible.
You can find more information about Washington University's Open Access Resolution in Becker Medical Library's Open Access subject guide “OA Resolution at WU”
Submissions from 2012
Development of a new humanized mouse model to study acute inflammatory arthritis, Alexander V. Misharin, G K. Haines, Shawn Rose, Angelical K. Gierut, Richard S. Hotchkiss, and Harris Perlman
Mitofusin2 mutations disrupt axonal mitochondrial positioning and promote axon degeneration, Albert L. Misko, Yo Sasaki, Elizabeth Tuck, Jeffrey Milbrandt, and Robert H. Baloh
Association between human papillomavirus DNA and temporal arteritis, Amir Mohammadi, John D. Pfeifer, and James S. Lewis
Intestinal adenocarcinoma arising in urinary conduits, Genevieve C. Moyer, Robert L. Grubb III, and Frank E. Johnson
Ligand-induced movements of inner transmembrane helices of Glut1 revealed by chemical cross-linking of di-cysteine mutants, Mike Mueckler and Carol Makepeace
Neural synchrony during response production and inhibition, Viktor Muller and Andrey P. Anokhin
Plasmodium falciparum heat shock protein 110 stabilizes the asparagine repeat-rich parasite proteome during malarial fevers, Vasant Muralidharan, Anna Oksman, Priya Pal, Susan Lindquist, and Daniel E. Goldberg
Relationships between serum MCP-1 and subclinical kidney disease: African American-Diabetes Heart Study, Mariana Murea, Thomas C. Register, Jasmin Divers, Donald W. Bowden, J. Jeffrey Carr, Caresse R. Hightower, Jianzhao Xu, S. Carrie Smith, Keith A. Hruska, Carl D. Langefeld, and Barry I. Freedman
Frequent hospital readmissions for Clostridium difficile infection and the impact on estimates of hospital-associated C. difficile burden, Courtney R. Murphy, Taliser R. Avery, Erik R. Dubberke, and Susan S. Huang
Periacetabular osteotomy and combined femoral head-neck junction osteochondroplasty: A minimum two-year follow-up cohort study, Nader A. Nassif, Perry L. Schoenecker, Robert Thorsness, and John C. Clohisy
Meniscal Repair outcomes at greater than five years: A systematic literature review and meta-analysis, Jeffrey J. Nepple, Warren R. Dunn, and Rick W. Wright
Description of a multicenter safety checklist for intraoperative hemorrhage control while clamped during robotic partial nephrectomy, Kenneth G. Nepple, Gurdarshan S. Sandhu, Craig G. Rogers, Mohamad E. Allaf, Jihad H. Kaouk, Robert S. Figenshau, Michael D. Stifelman, and Sam B. Bhayani
Reliability and validity of the Wolfram Unified Rating Scale (WURS), Chau Nguyen, Erin R. Foster, Alexander R. Paciorkowski, Amy Viehoever, Colleen Considine, Aidena Bondurant, Bess A. Marshall, Tamara Hershey, and Washington University Wolfram Study Group
Hospitalized cardiovascular events in patients with diabetic macular edema, Bao-Anh Nguyen-Khoa, Earl L. Goehring Jr., Winifred Werther, Anne E. Fung, Diana V. Do, Rajendra S. Apte, and Judith K. Jones
State legislation savvy: A primer and tools for online legislative research in the United States, Leah M. Nguyen, Amy A. Eyler, Jooyoung Kong, and Ross C. Brownson
Spark: A navigational paradigm for genomic data exploration, Cydney B. Nielsen, Hamid Younesy, Henriette O'Geen, Xiaoqin Xu, Andrew R. Jackson, Aleksandar Milosavljevic, Ting Wang, Joseph F. Costello, Martin Hirst, Peggy J. Farnham, and Steven J.M. Jones
The metal ion-dependent adhesion site motif of the Enterococcus faecalis EbpA pilin mediates pilus function in catheter-associated urinary tract infection, Hailyn V. Nielsen, Pascale S. Guiton, Kimberly A. Kline, Gary C. Port, Jerome S. Pinkner, Fabrice Neiers, Staffan Normark, Birgitta Henriques-Normark, Michael G. Caparon, and Scott J. Hultgren
A window into domain amplification through Piccolo in teleost fish, Michael L. Nonet
MHC class I cross-presentation by dendritic cells counteracts viral immune evasion, Katrin Nopora, Caroline A. Bernhard, Christine Ried, Alejandro A. Castello, Kenneth M. Murphy, Peggy Marconi, Ulrich Koszinowski, and Thomas Brocker
A bioinformatics filtering strategy for identifying radiation response biomarker candidates, Jung Hun Oh, Harry P. Wong, Xiaowei Wang, and Joseph O. Deasy
Strategies proposed by healthy kids, healthy communities partnerships to prevent childhood obesity, Punam Ohri-Vachaspati, Laura Leviton, Philip Bors, Laura K. Brennan, Ross C. Brownson, and Sarah Strunk
Incorporating patient preference into the management of infertility in women with polycystic ovary syndrome, Ugochi C. Okoroafor and Emily S. Jungheim
Quantitative brain electrical activity in the initial screening of mild traumatic brain injuries, Brian O'Neil, Leslie S. Prichep, Roseanne Naunhemi, and Robert Chabot
Cancer immunoediting by the innate immune system in the absence of adaptive immunity, Timothy O'Sullivan, Robert Saddawi-Konefka, William Vermi, Catherine M. Koebel, Cora Arthur, J. Michael White, Ravi Uppaluri, Daniel M. Andrews, Shin Foong Ngiow, Michele W. L. Teng, Mark J. Smith, Robert D. Schreiber, and Jack D. Bui
Constitutively active canonical NF-kB pathway induces severe bone loss in mice, Jesse E. Otero, Tim Chen, Kaihua Zhang, and Yousef Abu-Amer
Cystatin C and baseline renal function among HIV-infected persons in the SUN study, Edgar Turner Overton, Pragna Patel, Kristin Mondy, Tim Bush, Lois Conley, Frank Rhame, Erna Milunka Kojic, John Hammer, Keith Henry, and John T. Brooks
Induction of alternatively activated macrophages enhances pathogenesis during severe acute respiratory syndrome coronavirus infection, Carly Page, Lindsay Golcohea, Krystal Matthews, Yong Zhang, Peter Klover, Michael J. Holtzman, Lothar Hennighausen, and Matthew Frieman
MicroRNAs are exported from malignant cells in customized particles, Jaime Palma, Scree C. Yaddanapudi, Lucy Pigati, Mallory A. Havens, Sarah Jeong, Geoffrey A. Weiner, Kristina Mary Ellen Weimer, Brittany Stern, Michelle L. Hastings, and Dominik M. Duelli
Meeting the need for regenerative therapies I: Target-based incidence and its relationship to U.S spending, productivity, and innovation, Nancy Parenteau, Janet Hardin-Young, William Shannon, Patrick Cantini, and Alan Russell
High throughput screening for small molecule enhancers of the interferon signaling pathway to drive next-generation antiviral drug discovery, Dhara A. Patel, Anand C. Patel, William C. Nolan, Yong Zhang, and Michael J. Holtzman
Antiangiogenic and anticancer molecules in cartilage, Debabrata Patra and Linda J. Sandell
Multi-Institutional experience with FOLFIRINOX in pancreatic adenocarcinoma, Parvin F. Peddi, Sam Lubner, Robert McWilliams, Benjamin R. Tan, Joel Picus, Steven M. Sorscher, Rama Suresh, A Craig Lockhart, Jian Wang, Christine Menias, Feng Gao, David Linehan, and Andrea Wang-Gilliam
The hemispheric lateralization of speech processing depends on what "speech" is: A hierarchical perspective, Jonathan E. Peelle
The trauma patient in hemorrhagic shock: How is the C-priority addressed between emergency and ICU admission?, Sigune Peiniger, Thomas Paffrath, Manuel Mutschler, Thomas Brockamp, Matthew Borgmann, Philip C. Spinella, Bertil Bouillon, Marc Maegele, and TraumaRegister DGU
Multi-locus genome-wide association analysis supports the role of glutamatergic synaptic transmission in the etiology of major depressive disorder, M. L. Pergadia and et al
Active reward processing during human sleep: Insights from sleep-related eating disorder, Lampros Perogamvros, Patrick Baud, Roland Hasler, Claude Robert Cloninger, Sophie Schwartz, and Stephen Perrig
Multi-institutional analysis of robot-assisted partial nephrectomy for renal tumors >4 cm versus ≤4 cm in 445 consecutive patients, Firas Petros, Shyam Sukumar, Georges-Pascal Haber, Lori Dulabon, Sam Bhayani, Michael Stifelman, Jihad Kaouk, and Craig Rogers
Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains, Helena Petrosova, Maria Zobanikova, Darina Cejkova, Lenka Mikalova, Petra Pospisilova, Michal Strouhal, Lei Chen, Xiang Qin, Donna M. Muzny, George M. Weinstock, and David Smajs
The Vermont oxford neonatal encephalopathy registry: Rationale, methods, and initial results, Roger H. Pfister, Peter Bingham, Erika M. Edwards, Jeffrey D. Horbar, Michael J. Kenny, Terrie Inder, Karin B. Nelson, Tonse Raju, and Roger F. Soll
Early presentation of gait impairment in Wolfram Syndrome, Kristen A. Pickett, Ryan P. Duncan, James Hoekel, Bess Marshall, Tamara Hershey, Gammon M. Earhart, and Washington University Wolfram Study Group
Acute Respiratory Distress Syndrome: Pathophysiology and therapeutic options, Charalampos Pierrakos, Menelaos Karanikolas, Sabino Scolletta, Vasilios Karamouzos, and Dimitrios Velissaris
Data sharing in neuroimaging research, Jean-Baptiste Poline, Janis L. Breeze, Satrajit Ghosh, Krzysztof Gorgolewski, Yaroslav O. Halchenko, Michael Hanke, Christian Haselgrove, Karl G. Helmer, David B. Keator, Daniel S. Marcus, Russell A. Poldrack, Yannick Schwartz, John Ashburner, and David N. Kennedy
Hunter-gatherer energetics and human obesity, Herman Pontzer, David A. Raichlen, Brian M. Wood, Audax Z. P. Mabulla, Susan B. Racette, and Frank W. Marlowe
A cross-species analysis of microRNAs in the developing avian face, Kara E. Powder, Yuan-Chieh Ku, Samantha A. Brugmann, Rose A. Veile, Nicole A. Renaud, Jill A. Helms, and Michael Lovett
Cost-effectiveness of peer-delivered interventions for cocaine and alcohol abuse among women: A randomized controlled trial, Jennifer Prah Ruger, Arbi Ben Abdallah, Craig Luekens, and Linda Cottler
Cancer control needs of 2-1-1 callers in Missouri, North Carolina, Texas, and Washington, Jason Q. Purnell, Matthew W. Kreuter, Katherine S. Eddens, Kurt M. Ribisl, Peggy Hannon, Rebecca S. Williams, Marie E. Fernandez, David Jobe, Susan Gemmel, Marti Morris, and Debbie Fagin
Retrotransposon profiling of RNA polymerase III initiation sites, Xiaojie Qi, Kenneth Daily, Kim Nguyen, Haoyi Wang, David Mayhew, Paul Rigor, Sholeh Forouzan, Mark Johnston, Robi David Mitra, Pierre Baldi, and Suzanne Sandmeyer
Advancing the application, quality and harmonization of implementation science measures, Borsika A. Rabin, Peyton Purcell, Sana Naveed, Richard P. Moser, Michelle D. Henton, Enola K. Proctor, Ross C. Brownson, and Russell E. Glasgow
Medicaid expenditures on psychotropic medications for children in the child welfare system, Ramesh Raghavan, Derek S. Brown, Hope Thompson, Susan L. Ettner, Lisa M. Clements, and Whitney Key
Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing, Enrique Ramos, Benjamin T. Levinson, Sara Chasnoff, Andrew Hughes, Andrew L. Young, Katherine Thornton, Allie Li, Francesco L.M Vallania, Michael Province, and Todd E. Druley
Effects of Doxycycline on gene expression in Wolbachia and Brugia malayi adult female worms in vivo, Ramakrishna U. Rao, Yuefang Huang, Sahar Abubucker, Michael Heinz, Seth D. Crosby, Makedonka Mitreva, and Gary J. Weil
CXCL12 mediates trophic interactions between endothelial and tumor cells in glioblastoma, Shyam Rao, Rajarshi Sengupta, Eun Joo Choe, B. Mark Woerner, Erin Jackson, Tao Sun, Jeffrey Leonard, David Piwnica-Worms, and Joshua B. Rubin
Neural correlates of prior expectations of motion in the lateral intraparietal and middle temporal areas, Vinod Rao, Gregory C. DeAngelis, and Lawrence H. Snyder
Intrinsic flexibility of snRNA hairpin loops facilitates protein binding, Michael Rau, W. T. Stump, and Kathleen B. Hall
LINC complexes mediate the positioning of cone photoreceptor nuclei in mouse retina, David Razafsky, Nathaniel Blecher, Alexander Markov, P. J. Stewart-Hutchinson, and Didier Hodzic
Structural insight into MR1-mediated recognition of the mucosal associated invariant T cell receptor, Rangsima Reantragoon, Lars Kjer-Nielsen, Onisha Patel, Zhenjun Chen, Patricia T. Illing, Mugdha Bhati, Lyudmila Kostenko, Mandvi Bharadwaj, Bronwyn Meehan, Ted H. Hansen, Dale I. Godfrey, Jamie Rossjohn, and James McCluskey
Bone marrow transplantation alters the tremor phenotype in the murine model of globoid-cell leukodystrophy, Adarsh S. Reddy, David F. Wozniak, Nuri B. Farber, Joshua T. Dearborn, Stephen C. Fowler, and Mark S. Sands
Working memory related brain network connectivity in individuals with schizophrenia and their siblings, Grega Repovs and Deanna M. Barch
Health related quality of life outcomes for unresectable stage III or IV melanoma patients receiving ipilimumab treatment, Dennis A. Revicki, Alfons JM van den Eertwegh, Paul Lorigan, Celeste Lebbe, Gerald Linette, Christian H. Ottensmeier, Shima Safikhani, Marianne Messina, Alex Hoos, Samuel Wagner, and Srividya Kotapati
IS-seq: A novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes, Alejandro Reyes, Andrea Sandoval, Andrés Cubillos-Ruiz, Katherine E. Varley, Ivan Hernández-Neuta, Sofía Samper, Carlos Martín, María Jesús García, Viviana Ritacco, Lucelly López, Jaime Robledo, María Mercedes Zambrano, Robi D. Mitra, and Patricia Del Portillo
Expression of sialic acids and other nonulosonic acids in Leptospira, Jessica N. Ricaldi, Michael A. Matthias, Joseph M. Vinetz, and Amanda L. Lewis
Estimating the heritability of reporting stressful life events captured by common genetic variants, J. P. Rice and et al
Mutations in the gene PRRT2 cause paroxysmal kinesigenic dyskinesia with infantile convulsions, Elisha D.O. Roberson, Christina A. Gurnett, Anne M. Bowcock, and et al
Cooperative role of antibodies against heat-labile toxin and the EtpA adhesin in preventing toxin delivery and intestinal colonization by enterotoxigenic Escherichia coli, Koushik Roy, David J. Hamilton, and James M. Fleckenstein
Chronic intestinal inflammation: Inflammatory bowel disease and colitis-associated colon cancer, Deborah C. Rubin, Anisa Shaker, and Marc S. Levin
Functional relationships between lipid metabolism and liver regeneration, David A. Rudnick and Nicholas O. Davidson
Tools to discriminate between targets of CK2 vs PLK2/PLK3 acidophilic kinases, M. Salvi, E. Trashi, G. Cozza, P. I. Hanson, and L. A. Pinna
Clinical characteristics, comorbidities, and response to treatment of veterans with obstructive sleep apnea, Cincinnati Veterans Affairs Medical Center, 2005-2007, Pamela Samson, Kenneth R. Casey, James Knepler, and Ralph J. Panos
African American parents' HPV vaccination intent and concerns, Vetta L. Sanders Thompson, Lauren D. Arnold, and Sheri R. Notaro
Hepatitis C virus mediated changes in miRNA-449a modulates inflammatory biomarker YKL40 through components of the NOTCH signaling pathway, Nayan J. Sarma, Venkataswarup Tiriveedhi, Vijay Subramanian, Surendra Shenoy, Jeffrey S. Crippin, William C. Chapman, and Thalachallour Mohanakumar
The new nucleoporin: Regulator of transcriptional repression and beyond, Nayan J. Sarma and Kristine Willis
Cannabis or alcohol first? Differences by ethnicity and in risk for rapid progression to cannabis-related problems in women, C. E. Sartor, A. Agrawal, M. T. Lynskey, A. E. Duncan, J. D. Grant, E. C. Nelson, P. A. Madden, A. C. Heath, and K. K. Bucholz
Zbtb46 expression distinguishes classical dendritic cells and their committed progenitors from other immune lineages, Ansuman T. Satpathy, Wumesh KC, Jörn C. Albring, Brian T. Edelson, Nicole M. Kretzer, Deepta Bhattacharya, Theresa L. Murphy, and Kenneth M. Murphy
Human cytomegalovirus pUL29/28 and pUL38 repression of p53-regulated p21CIP1 and caspase 1 promoters during infection, John P. Savaryn, Justin M. Reitsma, Tarin M. Bigley, Brian D. Halligan, Zhikang Xian, Dong Yu, and Scott S. Terhune
Review of the BCI competition IV, Gerwin Schalk and et al
Offspring ADHD as a risk factor for parental marital problems: Controls for genetic and environmental confounds, Alice C. Schermerhorn, Brian M. D'Onofrio, Wendy S. Slutske, Robert E. Emery, Eric Turkheimer, K. Paige Harden, Andrew C. Heath, and Nicholas G. Martin
CIN85 phosphorylation is essential for EGFR ubiquitination and sorting into multivesicular bodies, Barbara Schroeder, Subhashini Srivatsan, Andrey Shaw, Daniel Billadeau, and Mark A. McNiven
PyXNAT: XNAT in Python, Yannick Schwartz, Alexis Barbot, Benjamin Thyreau, Vincent Frouin, Gael Varoquaux, Aditya Siram, Daniel S. Marcus, and Jean-Baptiste Poline
SmD3 regulates intronic noncoding RNA biogenesis, Benjamin S. Scruggs, Carlos I. Michel, Daniel S. Ory, and Jean E. Schaffer
Immunohistochemical study of epiretinal membranes in patients with uveitis, Arsham Sheybani, George J. Harocopos, and P. Kumar Rao
Mechanisms of remodeling in asthmatic airways, Adrian Shifren, Chad Witt, Chandrika Christie, and Mario Castro
Three ontologies to define phenotype measurement data, Mary Shimoyama, Rajni Nigam, Leslie Sanders McIntosh, Rakesh Nagarajan, Treva Rice, D. C. Rao, and Melinda R. Dwinell
Zebrafish neurofibromatosis type 1 genes have redundant functions in tumorigenesis and embryonic development, Jimann Shin, Arun Padmanabhan, Eric D. de Groh, Jeong-Soo Lee, Sam Haidar, Suzanne Dahlberg, Feng Guo, Shuning He, Marc A. Wolman, Michael Granato, Nathan D. Lawson, Scot A. Wolfe, Seok-Hyung Kim, Lilianna Solnica-Krezel, John P. Kanki, Keith L. Ligon, Jonathan A. Epstein, and A. Thomas Look
Thalamocortical dysfunction and thalamic injury after asphyxial cardiac arrest in developing rats, Michael Shoykhet, Daniel J. Simons, Henry Alexander, Christina Hosler, Patrick M. Kochanek, and Robert S. Clark
Human polyomaviruses in children undergoing transplantation, United States, 2008-2010, Erica A. Siebrasse, Irma Bauer, Lori R. Holtz, Binh-minh Le, Sherry Lassa-Claxton, Charles Canter, Paul Hmiel, Shalini Shenoy, Stuart Sweet, Yumirle Turmelle, Ross Shepherd, and David Wang
A tetravalent dengue nanoparticle stimulates antibody production in mice, Elisangela F. Silva, Mariana Orsi, Angela L. Andrade, Rosana Z. Domingues, Breno M. Silva, Helena RC de Araujo, Paulo FP Pimenta, Michael S. Diamond, Eliseu SO Rocha, Erna G. Kroon, Luiz CC Malaquias, and Luiz FL Coelho
Sexually dimorphic effect of aging on skeletal muscle protein synthesis, Gordon I. Smith, Dominic N. Reeds, Angela M. Hall, Kari T. Chambers, Brian N. Finck, and Bettina Mittendorfer
Upper extremity-specific measures of disability and outcomes in orthopaedic surgery, Matthew V. Smith, Ryan P. Calfee, Keith M. Baumgarten, Robert H. Brophy, and Rick W. Wright
Lower extremity-specific measures of disability and outcomes in orthopaedic surgery, Matthew V. Smith, Sandra E. Klein, John C. Clohisy, Geneva R. Baca, Robert H. Brophy, and Rick W. Wright
Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes, Erica Sodergren, George M. Weinstock, and et al
Complement regulatory protein Crry deficiency contributes to the antigen specific recall response in experimental autoimmune myasthenia gravis, Jindrich Soltys and Xiaobo Wu
Papillary renal carcinoma presenting as a cancer of unknown primary (CUP) and diagnosed through gene expression profiling, Steven M. Sorscher and Frank Anthony Greco
Spontaneous activity promotes synapse formation in a cell-type-dependent manner in the developing retina, Florentina Soto, Xiaofeng Ma, Jacob L. Cecil, Bradly Q. Vo, Susan M. Culican, and Daniel Kerschensteiner
ScerTF: A comprehensive database of benchmarked position weight matrices for Saccharomyces species, Aaron T. Spivak and Gary D. Stormo
Measurement properties of a novel survey to assess stages of organizational readiness for evidence-based interventions in community chronic disease prevention settings, Katherine A. Stamatakis, Amy McQueen, Carl Filler, Elizabeth Boland, Mariah Dreisinger, Ross C. Brownson, and Douglas A. Luke
CCL2 upregulation triggers hypoxic preconditioning-induced protection from stroke, Ann M. Stowe, Bradley K. Wacker, Petra D. Cravens, Jennifer L. Perfater, Min K. Li, Ruilong Hu, Angela B. Freie, Olaf Stuve, and Jeffrey M. Gidday
Evaluation of the efficiency and effectiveness of independent dose calculation followed by machine log file analysis against conventional measurement based IMRT QA, Baozhou Sun, Dharanipathy Rangaraj, Sunita Boddu, Murty Goddu, Deshan Yang, Geethpriya Palaniswaamy, Sridhar Yaddanapudi, Omar Wooten, and Sasa Mutic
Genome-wide meta-analyses of smoking behaviors in African Americans, Y. J. Sung, D. C. Rao, and et al
Why does Jack, and not Jill, break his crown? Sex disparity in brain tumors, Tao Sun, Nicole M. Warrington, and Joshua B. Rubin
Trichomonosis, a common curable STI, and prostate carcinogenesis—A proposed molecular mechanism, Siobhan Sutcliffe, Calvin Neace, Nancy S. Magnuson, Raymond Reeves, and J F. Alderete
